View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_3 (Length: 606)
Name: NF17742_low_3
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 3e-96; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 10 - 256
Target Start/End: Complemental strand, 24377579 - 24377326
Alignment:
| Q |
10 |
catcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaagcatatatatataactcaatggaagcttgagt |
109 |
Q |
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| T |
24377579 |
catcatcatcataagcaacagaagcagtcgttatttgtagagaattttgcttattcatctttatccaagcatatata----actcaatggaagtttgagt |
24377484 |
T |
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| Q |
110 |
ttggtgcatatgatagaaaatcctgagctacaataataaagacaaattaacgagcaacgatgaagctcacaatgcaaatgatcttagttgcaatataaaa |
209 |
Q |
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| T |
24377483 |
ttgctgcatatgatagaaaatcctgagctacaataataaagacaaattaacgagcaacgatgaagctcacaatgcaaatgatcttagttgcaatataaaa |
24377384 |
T |
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| Q |
210 |
ttataggctatagta-----------gctaggatccttttcgagcaacgatgaagatc |
256 |
Q |
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| T |
24377383 |
ttataggctatagtaattatataggtgttaggatccttttcgagcaacgatgaagatc |
24377326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 350 - 534
Target Start/End: Complemental strand, 24377176 - 24376985
Alignment:
| Q |
350 |
tgagaagaggtgggtggagtgggtacctgaa-----gtactgaaccgggtaaggatcccgcaccgagtgtggagattctaaatccgactgagttgg---g |
441 |
Q |
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| T |
24377176 |
tgagaagaggtgggtggagtggggacctgaactactttactgaaccgggtaaggat-ccgcaccgagtgtggagattctaaatccgactgagttgggttg |
24377078 |
T |
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| Q |
442 |
atgttatatactcaactttcaaaggttgtttagccattgccgccgattattccgtgcttttttgtttcttttcactaaatatctcttatctct |
534 |
Q |
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| T |
24377077 |
ttgttatatactccactttcaaaggttgtttagccattgccgccgattattccgtgcttttctgtttattttcactaaatatctcttatctct |
24376985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 24412864 - 24412796
Alignment:
| Q |
10 |
catcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
78 |
Q |
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||||||||||||||||| ||||||| ||||||||||||||||||||| | || ||| |||||||||| |
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| T |
24412864 |
catcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24412796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 24421177 - 24421245
Alignment:
| Q |
10 |
catcatcatcataagcaacagaagcagttgttatttgaagagagttttgcttattcatctttatccaag |
78 |
Q |
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| T |
24421177 |
catcatcatcataagcaccagaagcttttgttatttgaagagagtttttcccatccatttttatccaag |
24421245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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