View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_31 (Length: 392)
Name: NF17742_low_31
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 52001769 - 52002003
Alignment:
| Q |
47 |
tttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataaatgactcgttc |
146 |
Q |
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| T |
52001769 |
tttttctttattctctgaaacactatgaatgcgtgacgcaaatctctttgcagtgtctttgttaaatagcttgtactgacttctaataaatgactcgttc |
52001868 |
T |
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| Q |
147 |
ctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgatttt |
246 |
Q |
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| T |
52001869 |
ctacaaatctcaaaatcatcatcgttgtcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtagttgatttt |
52001968 |
T |
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| Q |
247 |
ctggtatttccttcctctgatgatgatcatcaatg |
281 |
Q |
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| T |
52001969 |
ctggtatttccttcctctgatgatgatcatcaatg |
52002003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 313 - 375
Target Start/End: Original strand, 52002002 - 52002064
Alignment:
| Q |
313 |
tgagtggtttctttccttttggatcggaagtgttttcaaagttgtagagttttgtgcgtttag |
375 |
Q |
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| T |
52002002 |
tgagtggtttctttccttttggatcagaagtgttttcaaagttgtagagttttgtgcgtttag |
52002064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 174 - 267
Target Start/End: Original strand, 52011785 - 52011878
Alignment:
| Q |
174 |
tcgctatcatcagtttcagtttcgctgttaatattataagcattgatatcaaaagccaaaggtatttgattttctggtatttccttcctctgat |
267 |
Q |
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| T |
52011785 |
tcgctatcattagtttcagtttcattggtaatgatatagtcattaatatccaaatccagtgatatttgattttctgttatttccttcctctgat |
52011878 |
T |
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