View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_33 (Length: 372)
Name: NF17742_low_33
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_33 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 358
Target Start/End: Complemental strand, 32667354 - 32667007
Alignment:
| Q |
12 |
catcatcatagcaggaatgggacttttcactgactcttatgacctcttctc-atcacactcatcacaaagatgctaggaagaatatactactctgaccac |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32667354 |
catcatcatagcaggaatgggacttttcactgactcttatgaccttttttccatcacactcatcacaaagatgctaggaagaatatactactccgaccac |
32667255 |
T |
|
| Q |
111 |
caagaaatccgtcaagtcaacccggtcgtggtctcagctcttgtctccgtcgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggag |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667254 |
caagaaatccgtcaagtcaacccggtcgtggtctcagcccttgtctccgttgcactcctaggaaccgccttcggtcagctcctattcggacgcctcggag |
32667155 |
T |
|
| Q |
211 |
acctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttg |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667154 |
acctaaaaggccggcgccacgtctacggtatcgccttattattgatgctaacaagctctctagcttctggcttctccatctgtacaacaaagagagcttg |
32667055 |
T |
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| Q |
311 |
tgttttactatctcttggtttctttagattcttcttagggcttggaat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32667054 |
tgttttactatctcttggtttctttagattcttcttagggcttggaat |
32667007 |
T |
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