View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_34 (Length: 366)
Name: NF17742_low_34
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_34 |
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Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 14812918 - 14812581
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
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| T |
14812918 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
14812821 |
T |
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| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
217 |
Q |
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| T |
14812820 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
14812721 |
T |
|
| Q |
218 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14812720 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
14812621 |
T |
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| Q |
318 |
ggaaatagtgaggaaattattcttgacaaggtgatgatgt |
357 |
Q |
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| T |
14812620 |
ggaaatagtgaggaaattattcttgacaaggtgatgatgt |
14812581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 357
Target Start/End: Complemental strand, 15259913 - 15259576
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259913 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
15259816 |
T |
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| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259815 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
15259716 |
T |
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| Q |
218 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15259715 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
15259616 |
T |
|
| Q |
318 |
ggaaatagtgaggaaattattcttgacaaggtgatgatgt |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15259615 |
ggaaatagtgaggaaattattcttgacaaggtgatgatgt |
15259576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 357
Target Start/End: Original strand, 17521262 - 17521599
Alignment:
| Q |
18 |
attttctctacatatcctaatggactccttacaatacagaaagtagtgaatctctatgttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
117 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521262 |
attttctctacatatcctaatggactctttacaatacagaaagtagcgaatctct--gttagaaacacaggtgaaaagtttgtaaaagatccaaaaaggt |
17521359 |
T |
|
| Q |
118 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521360 |
taaaggatcctatgatttttgttcaagaacttttggacatgaaagataaatatgatagtatattaaacttggcatttaatcatgatgaagaattccatgg |
17521459 |
T |
|
| Q |
218 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17521460 |
agtgctggactcatcatttgagtacattattaacttgaatcacaatttgccagagtttctttcgtcgttcttggatgtcaaattaaggaaaggtttcgaa |
17521559 |
T |
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| Q |
318 |
ggaaatagtgaggaaattattcttgacaaggtgatgatgt |
357 |
Q |
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||||||||||||||||||||||||||||||||| |||||| |
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| T |
17521560 |
ggaaatagtgaggaaattattcttgacaaggtggtgatgt |
17521599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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