View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_35 (Length: 364)
Name: NF17742_low_35
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 55 - 359
Target Start/End: Complemental strand, 36567414 - 36567110
Alignment:
| Q |
55 |
tctctgtttgaggtggatttgaacatatttagccattctgataaatgttatcttctgaattggactactaaaacataaaacaagtgaagtattttgttga |
154 |
Q |
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| T |
36567414 |
tctctgtttgaggtggatttgaacatatttagccattctgataaatgttatcttctgaattggactactaaaacataaaacaagtgaagtattttgttga |
36567315 |
T |
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| Q |
155 |
acctctttttctgtttcaaacggggcttaagaaactttgaagttactggttactggctgacataagatatcaatctactgaagattttccttgtattgaa |
254 |
Q |
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| T |
36567314 |
acctctttttctgtttcaaacggggcttaagaaactttgaagttactggttactggctgacataagatatcaatctactgaagattttccttgtattgaa |
36567215 |
T |
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| Q |
255 |
actttcgccgcagaattagtagaagatgtggatctcttgattaggagagctgagaggtgtttagaagcgggtgcagacatgataatgattgatgctgatg |
354 |
Q |
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| T |
36567214 |
actttcgccgcagaattagtagaagatgtggatctcttgattaggagagctgagaggtgtttagaagcgggtgcagacatgataatgattgatgctgatg |
36567115 |
T |
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| Q |
355 |
atgtc |
359 |
Q |
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||||| |
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| T |
36567114 |
atgtc |
36567110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 36567489 - 36567447
Alignment:
| Q |
17 |
cacctagatcatatggtaaagatatttcactctctctttctct |
59 |
Q |
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| T |
36567489 |
cacctagatcatatggtaaagatatttcactctctctttctct |
36567447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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