View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17742_low_36 (Length: 358)
Name: NF17742_low_36
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_36 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 7 - 358
Target Start/End: Original strand, 8683222 - 8683574
Alignment:
| Q |
7 |
atacagacacttctatttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgtcaattgtaattgttggttcatacagttacataa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8683222 |
atacagacacttctatttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgccaattgtaattgttggttcatacagttacataa |
8683321 |
T |
|
| Q |
107 |
tacctataatttctattgttcaggctagcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctg-ttttttcgtaca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8683322 |
tacctataatttctattgttcaggctagcagatataatgcatatacagatccttatgaggtaaatcaaactattttttatgcttctgtttttttcgtaca |
8683421 |
T |
|
| Q |
206 |
tgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8683422 |
tgttataaatggaaaatgtttcactctttagcgttttcattttgctgactttgtctacatgtttgtttgaatttcctagaggtttactatgacaatgaga |
8683521 |
T |
|
| Q |
306 |
gggattcaaggtgccttgatcataagttccagtttccaaacggctcttggatt |
358 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||| |||| ||||||| |
|
|
| T |
8683522 |
gggattcaaggtgctttgatcataagttcaagtttccaaatggctattggatt |
8683574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 47579540 - 47579685
Alignment:
| Q |
22 |
tttgtgtctggactaagcacattttttcaatctttgttcggaactcgattgtcaattgtaattgttggttcatacagttacataatacctataatttcta |
121 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||||| |||||||| |||||| ||| |||| ||||||||||||||| |||||| ||||| || || || |
|
|
| T |
47579540 |
tttgtttctggactgagcacgtttcttcaatctttattcggaacccgattgccaagtgtagttgttggttcatacacttacatgataccaattatgtcag |
47579639 |
T |
|
| Q |
122 |
ttgttcaggctagcagatataatgcatatacagatccttatgaggt |
167 |
Q |
| |
|
|||||| ||||||||||| | | |||||||||||||||||||||| |
|
|
| T |
47579640 |
ctgttcaagctagcagatacagttcatatacagatccttatgaggt |
47579685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University