View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_4 (Length: 551)
Name: NF17742_low_4
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 12 - 535
Target Start/End: Original strand, 42899010 - 42899533
Alignment:
| Q |
12 |
tcatcacaacatgaacaatctccaaacacaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagta |
111 |
Q |
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| T |
42899010 |
tcatcacaacatgaacaatctccaaactcaagatatccaaggcttcacattgaagaaagagcatcaaagtttcaacatgttaaggccagaacaagaagta |
42899109 |
T |
|
| Q |
112 |
caaataccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899110 |
caaataccctcttggctttgtcaatcatccattgatctctcttcaaactattcaagtttggatcaagatctacacctttatgaaaaccctaaccctagaa |
42899209 |
T |
|
| Q |
212 |
atggtcctactcctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgc |
311 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899210 |
atggtcctacttctacacttccatcctaccaaccatcatctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgc |
42899309 |
T |
|
| Q |
312 |
aaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaat |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899310 |
aaccagctcatgctcatcacagtccatgatgagtgggacccaccaacagggtcacgtgtctattgttgactctgccaccaacaacatgataaactcaaat |
42899409 |
T |
|
| Q |
412 |
ggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42899410 |
ggtaattttagtttgaatttgtcctcatgtgaagaccaaatgataaacaactctttctcttcttctggatttcatggaacttcttttgaggatacttttg |
42899509 |
T |
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| Q |
512 |
ctggaaatattcttcattcaaatc |
535 |
Q |
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| T |
42899510 |
ctggaaatattcttcattcaaatc |
42899533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 5787666 - 5787617
Alignment:
| Q |
265 |
cacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
314 |
Q |
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|||||||||||||| |||||||| |||||||||||||| ||||||||||| |
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| T |
5787666 |
cacatgtcagctactgcattgttgcagaaagcagctcaaatgggtgcaac |
5787617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 36990837 - 36990900
Alignment:
| Q |
251 |
ctgcagcttcacctcacatgtcagctacagcattgttacagaaagcagctcagatgggtgcaac |
314 |
Q |
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||||| ||||||||||||||||||| || |||||| |||| ||||| ||||| ||||||||||| |
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| T |
36990837 |
ctgcaacttcacctcacatgtcagccactgcattgctacaaaaagctgctcaaatgggtgcaac |
36990900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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