View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17742_low_40 (Length: 329)
Name: NF17742_low_40
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_40 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 17 - 329
Target Start/End: Original strand, 44828255 - 44828567
Alignment:
| Q |
17 |
atagacaacaatattgtggtgnnnnnnnnggcaaaatattgatannnnnnncttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatcta |
116 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828255 |
atagacaacaatattgtggtgaaaaaaaaggcaaaatattgatatttttttcttgtatttaccatgcaacgacgacagtaaaagttgtcaaaagtatcta |
44828354 |
T |
|
| Q |
117 |
aagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44828355 |
aagagacactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcg |
44828454 |
T |
|
| Q |
217 |
ctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcgtacgcaattaatacaacacatatcacaaagaaacttatatttgtaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44828455 |
ctcctgcatattttgattgagaacatttgtccatgacataaaattagctgctcatacgtaattaatacaacacatatcacaaagaaacttatttttgtaa |
44828554 |
T |
|
| Q |
317 |
tacatattagaat |
329 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44828555 |
tacatattagaat |
44828567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 8370640 - 8370763
Alignment:
| Q |
123 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
222 |
Q |
| |
|
|||| ||||||||||||||| || | ||||| |||| | || |||||| | ||||||| || ||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
8370640 |
cacttaagcttttgttcaaatatatctcagtttgaggtccattttctccaaaatcttcagaatgttggtccttttccttgatattttgataatgctcctg |
8370739 |
T |
|
| Q |
223 |
catattttgattgagaacatttgt |
246 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
8370740 |
catattttgattgaaaatatttgt |
8370763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 246
Target Start/End: Original strand, 8372042 - 8372165
Alignment:
| Q |
123 |
cactcaagcttttgttcaaaaatgtatcagtctgagattcactttctctacgatcttcatcattttggtccttttccttgatatttttatatcgctcctg |
222 |
Q |
| |
|
|||||||||||||||||||| || | ||||| |||||| || |||||| | ||||||| || ||| || |||||| | |||||| ||| |||||||| |
|
|
| T |
8372042 |
cactcaagcttttgttcaaacatatctcagtttgagatccattttctccaaaatcttcagaatgttgatctttttccctaatatttcgataacgctcctg |
8372141 |
T |
|
| Q |
223 |
catattttgattgagaacatttgt |
246 |
Q |
| |
|
|||||||||||||| || |||||| |
|
|
| T |
8372142 |
catattttgattgaaaatatttgt |
8372165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University