View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_41 (Length: 324)
Name: NF17742_low_41
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 40429743 - 40430049
Alignment:
| Q |
1 |
aggtgattgaatccaataaggtaatattggattatactatatctctttttcattattatcatttattactatcaaccattattctaggaaactacgtatc |
100 |
Q |
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| T |
40429743 |
aggtgattaaatccaataaggtaatattggattatactatatctctttttcattattatcatttattactatcaaccattattctaggaaactacgtatc |
40429842 |
T |
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| Q |
101 |
tttgattttgcgcgtatatgtgattgaactgtaaaattatataatcattttccaacaaggattattagggtttgagtaggggagagnnnnnnnnnnnnnn |
200 |
Q |
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| T |
40429843 |
tttgattttgcgcgtatatgtgattgaactgtaaaattatataatcattttccaacaaggattattagggtttgagtaggggagag---aaaaaaaaaaa |
40429939 |
T |
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| Q |
201 |
nncaaagtgagttaaaaatggctgaagaggattcggttgaaatcaggtttaggttaaacaatggttctgatattggaccgtttaagtattcttctgctgc |
300 |
Q |
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| T |
40429940 |
aacaaagtgagttaaaaatggctgaagaggattcggttgaaatcaggtttaggttaaacaatggttctgatattggaccgtttaagtattcttctgctgc |
40430039 |
T |
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| Q |
301 |
cactgttgat |
310 |
Q |
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|||||||||| |
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| T |
40430040 |
cactgttgat |
40430049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 224 - 310
Target Start/End: Original strand, 40424420 - 40424506
Alignment:
| Q |
224 |
gaagaggattcggttgaaatcaggtttaggttaaacaatggttctgatattggaccgtttaagtattcttctgctgccactgttgat |
310 |
Q |
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| T |
40424420 |
gaagaagatttggttgatatcaagtttaggttatacgatggttctgatattggaccgtttaggtattcatctgctgctactgttgat |
40424506 |
T |
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