View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_44 (Length: 306)
Name: NF17742_low_44
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 3 - 288
Target Start/End: Complemental strand, 33791189 - 33790904
Alignment:
| Q |
3 |
agatggacatcatcaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgcta |
102 |
Q |
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| T |
33791189 |
agatgtacatcattaacagttgatactaatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaacagaatctcttgttgcta |
33791090 |
T |
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| Q |
103 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
202 |
Q |
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| T |
33791089 |
atgatattatgtctgcacatgaaactgttgatggacatgcattttctaggattcttttgatttcatctatgaggttatatcctcttacagtaaggtttgc |
33790990 |
T |
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| Q |
203 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattg |
288 |
Q |
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| T |
33790989 |
tcttgctgctttctctgattcattgcccttctttgagtctattaatatggatgcgtcacacccctgaaattaaatcaaccaaattg |
33790904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 33764098 - 33764212
Alignment:
| Q |
29 |
taatccatcacgtcttcctgtaggaacattgtaacttggtccacctgctaagacaactgaatctcttgttgctaatgatattatgtctgcacatgaaact |
128 |
Q |
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|||||| ||||||||||||||||||| |||||| ||||||| || | |||| | || | ||||||||| || | || || ||||||||||||||||| |
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| T |
33764098 |
taatccgtcacgtcttcctgtaggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatgaaacc |
33764197 |
T |
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| Q |
129 |
gttgatggacatgca |
143 |
Q |
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| T |
33764198 |
gttgatggacatgca |
33764212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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