View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_49 (Length: 292)
Name: NF17742_low_49
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 39446352 - 39446184
Alignment:
| Q |
13 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggagaacttgggttcaattcttaagtgaaatattttttggtcaa |
112 |
Q |
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| T |
39446352 |
ataaccaaacatttgacctcaattgttgatgaactccaccgataacaaattttttaggagaatttggattcgattctaaagtgaaacatttgttggccaa |
39446253 |
T |
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| Q |
113 |
attttacttatctcccaaccgaattcaggattacgagagcccttctcgttgaaactagagggtaaatac |
181 |
Q |
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| T |
39446252 |
attttatttctctcccaaccgaattcaggattacgagagcccttctcgttgaaaccagagggtaaatac |
39446184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 39446166 - 39446099
Alignment:
| Q |
207 |
ctctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctc |
274 |
Q |
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| T |
39446166 |
ctctccttaacaaatgtttgttagatttatttccaatgtcaagttctatttaatttaattcaatcctc |
39446099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 39467689 - 39467630
Alignment:
| Q |
13 |
ataaccaaacatttgagctcaattgttgatgaactccaccaataacgaattttttaggag |
72 |
Q |
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||||||||||||||||| | |||||||||||||||||||||| |||| ||||||||||| |
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| T |
39467689 |
ataaccaaacatttgagattaattgttgatgaactccaccaaggacgatttttttaggag |
39467630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 208 - 265
Target Start/End: Complemental strand, 35314931 - 35314874
Alignment:
| Q |
208 |
tctccttagcaaatgtttgttagatttatttccaatgtcaagttctatttaatttaat |
265 |
Q |
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| T |
35314931 |
tctccttaataaatgtttgttagatttatcgccaatgtaaaattctatttaatttaat |
35314874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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