View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_5 (Length: 546)

Name: NF17742_low_5
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_5
NF17742_low_5
[»] chr1 (1 HSPs)
chr1 (12-530)||(41637664-41638191)


Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Original strand, 41637664 - 41638191
Alignment:
Q  12 catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcatcttcggtggtcttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41637664 catcatcatctgattacgcaggaacacctcctcaacctcgtagtggtcattccgctgttaatattggaaaatccaaggttgtcgtcttcggtggtcttgt 41637763  T
Q  112 cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41637764 cgacaaaaaatttctcactgatattcttgtctatgatattggttagtgacccttttctctcttcttttgtgggttgttgtcaaaatttggaatttgattc 41637863  T
Q  212 gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagcatt 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41637864 gttttgtaatgttgaaattttcagaggctaagctatggtatcaaccggagtgtactggaagtgattcagatggacatgtgggtcccactccacgagcatt 41637963  T
Q  312 tcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggtggtcagaggtctagttactgtttcag---------nnnnnnncat 402  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||    
T  41637964 tcatgttgctgttgctattgattgtcatatgtttgtttttggtggccgttctggtggtcagaggtctagttactgtttcagttttttttattttttttat 41638063  T
Q  403 ttctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaagagttaatcttgattatacttagaccctatttgggtaaacaacta 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41638064 ttctcactatcttatcattacatgttttgtagatcacttagaatacattgagaaagagttaatcttgattatacttagaccctatttgggtaaacaacta 41638163  T
Q  503 aactataaatgtacatataagtgcttat 530  Q
    ||||||||||||||||||||||||||||    
T  41638164 aactataaatgtacatataagtgcttat 41638191  T

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