View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_55 (Length: 261)
Name: NF17742_low_55
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 253
Target Start/End: Complemental strand, 41992968 - 41992731
Alignment:
| Q |
17 |
acggtggacactgctaccacgagttcaaagctctctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcgattt |
116 |
Q |
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| T |
41992968 |
acggtggacactgctaccacgagttcaaagcactctcaatgcgaattttagaagttccaatgtgtagcttctgatccactgtgatttttcgccgcgattt |
41992869 |
T |
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| Q |
117 |
t-agtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctcct |
215 |
Q |
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| T |
41992868 |
ttagtgtttaccaaacacatgtgtactttcaattactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctcct |
41992769 |
T |
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| Q |
216 |
taaggactcctccaagtcctctactagatgatgatgat |
253 |
Q |
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| T |
41992768 |
taaggactcctccaagtcctctactagatgatgatgat |
41992731 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 149 - 235
Target Start/End: Original strand, 22020954 - 22021040
Alignment:
| Q |
149 |
tactcatgccaacatagaagcatgaccacacaccttcttattatgtatagcctagccctttgctccttaaggactcctccaagtcct |
235 |
Q |
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| T |
22020954 |
tactcatgccaacaaaggagcatgatcacacatctcctaattatgtatagccttgccctttgctctctaagtactcccccaaatcct |
22021040 |
T |
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