View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_57 (Length: 253)
Name: NF17742_low_57
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_57 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 31346851 - 31347086
Alignment:
| Q |
1 |
ctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaaga |
100 |
Q |
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| T |
31346851 |
ctcccaaaagaaaactcttggtttatgctttggtttgaggttgttccaatattctcattctccaactgcatcctcaacagcgattggtcttgagagaaga |
31346950 |
T |
|
| Q |
101 |
aaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaagaggatgaaat |
200 |
Q |
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|||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
31346951 |
aaaagtttgacgaatttccgaccattgaggtttggttcaaatcagcagctattacttcagctaaaggataaacatccatttgttttgaagaggatgaaat |
31347050 |
T |
|
| Q |
201 |
gttcaagatactagtttcattgttatgaacaatgtt |
236 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31347051 |
gttcaagatactagtttcattgttatgaacaatgtt |
31347086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 34 - 236
Target Start/End: Original strand, 31357544 - 31357746
Alignment:
| Q |
34 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacatcgattggtcttgagagaagaaaaagtttgatgaatttccgaccattgtagttt |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||| ||||| |||||||||| |||| |
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| T |
31357544 |
tttgaggttgttccaatattctcattctccaactgcatcctcaacagcaattgttcttgagagaagaaaaagtttgacgaattcccgaccattgaggttt |
31357643 |
T |
|
| Q |
134 |
ggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
233 |
Q |
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| T |
31357644 |
ggttcaaatcagcagctattacttcagctaaaggataaacatccaattgttttgaagaggatgaaatgttcaagatactagtttcattgttatgaacaat |
31357743 |
T |
|
| Q |
234 |
gtt |
236 |
Q |
| |
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||| |
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| T |
31357744 |
gtt |
31357746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 2920430 - 2920289
Alignment:
| Q |
98 |
agaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagagga |
194 |
Q |
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||||||||||||||||||| |||||||||| |||||||| |||| ||| || || ||||||| ||||| ||||||||||||||| ||||||||||| |
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| T |
2920430 |
agaaaaagtttgatgaattcccgaccattgaggtttggttggaatcagcaactgttccttcagcgaaagggttataaacatccatttgttttgaagagga |
2920331 |
T |
|
| Q |
195 |
tgaaatgttcaagatactagtttcattgttatgaacaatgtt |
236 |
Q |
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| T |
2920330 |
tgaaatgttcaagatacaagtttcattgttatgaacaatgtt |
2920289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 88 - 236
Target Start/End: Complemental strand, 2925822 - 2925674
Alignment:
| Q |
88 |
tcttgagagaagaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaaggataaacatccatttgctttg |
187 |
Q |
| |
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||||| ||||||||||||||||| ||||| ||| |||||| ||| |||| ||| || || || || |||||||||| |||||||||||||| |||| |
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| T |
2925822 |
tcttgggagaagaaaaagtttgaagaattcccggccattgaggttaggttgggatcagccactgttgctccagctaaagggtaaacatccatttgttttg |
2925723 |
T |
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| Q |
188 |
aagaggatgaaatgttcaagatactagtttcattgttatgaacaatgtt |
236 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2925722 |
aagacgatgaaatgttcaagatacttgtttcattgttatgaacaatgtt |
2925674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 29272460 - 29272326
Alignment:
| Q |
105 |
gtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggatgaaatg |
201 |
Q |
| |
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|||||||||||| |||||||||| |||||||| |||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
29272460 |
gtttgatgaattcccgaccattgaggtttggttggaatcagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggatgaaatg |
29272361 |
T |
|
| Q |
202 |
ttcaagatactagtttcattgttatgaacaatgtt |
236 |
Q |
| |
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||||||||||||||||||||||| ||||||||||| |
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| T |
29272360 |
ttcaagatactagtttcattgttgtgaacaatgtt |
29272326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 9447837 - 9447693
Alignment:
| Q |
99 |
gaaaaagtttgatgaatttccgaccattgtagtttggttcaaatcggcagctattacttcagctaaagg---ataaacatccatttgctttgaagaggat |
195 |
Q |
| |
|
|||||||||||||||||| ||||| |||| |||||||| ||| ||| | || ||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
9447837 |
gaaaaagtttgatgaattcccgacaattgaggtttggttggaataagcaattgttgcttcagctaaagggttataaacatccatttgttttgaagaggat |
9447738 |
T |
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| Q |
196 |
gaaatgttcaag----atactagtttcattgttatgaacaatgtt |
236 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |
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| T |
9447737 |
gaaatgttcaagatatatactagtttcattgttatgaacaatgtt |
9447693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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