View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_61 (Length: 242)
Name: NF17742_low_61
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_61 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 30942104 - 30942335
Alignment:
| Q |
1 |
ttaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30942104 |
ttaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaag |
30942203 |
T |
|
| Q |
101 |
ctaaggctagaggtataccttataagaagaaaaagaaaagcacaagtcaaagcaagggaagtgaagaatccagctctagtaatattcaattttcttgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30942204 |
ctaaggctagaggtataccttataagaagaaaaagaaaagcacaagtcaaagcaagggaagtgaagaatccagctccagtaatattcaattttcttgaat |
30942303 |
T |
|
| Q |
201 |
attcctttgtctatggtaatggttaattttga |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30942304 |
attcctttgtctatggtaatggttaattttga |
30942335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 32002142 - 32002006
Alignment:
| Q |
1 |
ttaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaag |
100 |
Q |
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||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||||||||||| | |||| ||| | ||| | ||||| ||||||| |
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| T |
32002142 |
ttaagagctgcttatgaagaaaatggtggattacctgaaactaatccttttgctagtggttccataagaatctatcttcgtgaggtgagagattctcaag |
32002043 |
T |
|
| Q |
101 |
ctaaggctagaggtataccttataagaagaaaaagaa |
137 |
Q |
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| T |
32002042 |
ctaaggctagaggaattccttacaagaagaaaaagaa |
32002006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 39556615 - 39556759
Alignment:
| Q |
1 |
ttaagggctgcttatgaagaaaatggtgggtctcctgatactaatccttttgctagtggttccattcgtgtctaccttagggagattagagagtctcaag |
100 |
Q |
| |
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||||||||||||||||| ||||| || || |||| || ||||||||||| || || ||| | ||||| || || ||||| ||| |||| |||| ||||| |
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| T |
39556615 |
ttaagggctgcttatgaggaaaacggcggaactccagagactaatcctttcgcgagcggtgctattcgcgtttatcttagagaggttagggagtgtcaag |
39556714 |
T |
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| Q |
101 |
ctaaggctagaggtataccttataagaagaaaaagaaaagcacaa |
145 |
Q |
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|||||||||| ||||| ||||| |||||||||||||| ||||||| |
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| T |
39556715 |
ctaaggctaggggtatcccttacaagaagaaaaagaagagcacaa |
39556759 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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