View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_62 (Length: 241)

Name: NF17742_low_62
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_62
NF17742_low_62
[»] chr6 (6 HSPs)
chr6 (1-222)||(11155627-11155848)
chr6 (1-227)||(11196074-11196300)
chr6 (78-219)||(11160566-11160707)
chr6 (78-222)||(11199147-11199291)
chr6 (31-180)||(11132375-11132524)
chr6 (71-120)||(11169976-11170025)
[»] chr8 (1 HSPs)
chr8 (68-121)||(12527925-12527978)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 11155627 - 11155848
Alignment:
Q  1 gatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctc 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11155627 gatttggaagctgattttaatctgaggaacacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagttattttcctc 11155726  T
Q  101 tcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggatta 200  Q
    |||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||||| | ||||||||| |||||||    
T  11155727 tcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggatta 11155826  T
Q  201 ttatgtccataatccccccatg 222  Q
    || ||| |||||||||||||||    
T  11155827 ttgtgttcataatccccccatg 11155848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 11196074 - 11196300
Alignment:
Q  1 gatttggaagctgattttaatctgaggaccacctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctc 100  Q
    ||||||||||| |||| | ||||||||| ||||||||| ||| |||||||||||||| |||||| |||| ||||||||||| ||||||| ||||||||||    
T  11196074 gatttggaagcggattatgatctgaggaacacctgccgcagcaggaggaatttccaacacaaatcttcctagcaagttgttgtccctagttattttcctc 11196173  T
Q  101 tcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaatgtgggtattccttgggatta 200  Q
    |||||||||||||||| ||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||||| | ||||||||| |||||||    
T  11196174 tcaccttcataaacatcaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcaggaattttggtattcctagggatta 11196273  T
Q  201 ttatgtccataatccccccatgtttct 227  Q
    |||| ||||||||||||||||||||||    
T  11196274 ttatttccataatccccccatgtttct 11196300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 219
Target Start/End: Original strand, 11160566 - 11160707
Alignment:
Q  78 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||  | ||||||||||||||||| |||||| | || |||    
T  11160566 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatttggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11160665  T
Q  178 aatgtgggtattccttgggattattatgtccataatcccccc 219  Q
    ||| | ||||||||| ||||||||| ||| ||||||||||||    
T  11160666 aattttggtattcctagggattattgtgttcataatcccccc 11160707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 78 - 222
Target Start/End: Original strand, 11199147 - 11199291
Alignment:
Q  78 tgttttccctagctattttcctctcaccttcataaacatgaattaaaatattgatttggttgtcaacatgtgtggtgaatacatcttccatgtcggtagg 177  Q
    |||||||||||| |||||||||||||||||||||||||||||||| |||||| || |||||||  | ||||||||||||||||| |||||| | || |||    
T  11199147 tgttttccctagttattttcctctcaccttcataaacatgaattagaatattcatgtggttgtgcaaatgtgtggtgaatacatgttccattttggcagg 11199246  T
Q  178 aatgtgggtattccttgggattattatgtccataatccccccatg 222  Q
    ||| | ||||||||| ||||||||| ||| |||||||||||||||    
T  11199247 aattttggtattcctagggattattgtgttcataatccccccatg 11199291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 11132375 - 11132524
Alignment:
Q  31 acctgccggagccggaggaatttccaaaacaaattttccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaattaaaatattg 130  Q
    |||||||||||| || ||||||||||||||||||||||| |||||||||||  || ||| |||||| || ||||| || ||||||||||| |||||||||    
T  11132375 acctgccggagctgggggaatttccaaaacaaattttcctagcaagttgttccccatagttatttttctttcaccctcgtaaacatgaatcaaaatattg 11132474  T
Q  131 atttggttgtcaacatgtgtggtgaatacatcttccatgtcggtaggaat 180  Q
     ||||||| | || |||||| |||||||| | |||||||  |||||||||    
T  11132475 gtttggttatgaagatgtgttgtgaatacttgttccatgctggtaggaat 11132524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 11169976 - 11170025
Alignment:
Q  71 agcaagttgttttccctagctattttcctctcaccttcataaacatgaat 120  Q
    ||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||    
T  11169976 agcaagttgttgtccttagttatttgcctctcaccctcataaacatgaat 11170025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 12527925 - 12527978
Alignment:
Q  68 ccaagcaagttgttttccctagctattttcctctcaccttcataaacatgaatt 121  Q
    ||||||||||||||||| ||||||||  | ||||| || |||||||||||||||    
T  12527925 ccaagcaagttgttttcgctagctatcattctctcgccctcataaacatgaatt 12527978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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