View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17742_low_64 (Length: 237)
Name: NF17742_low_64
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_64 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 32 - 221
Target Start/End: Original strand, 6488229 - 6488418
Alignment:
| Q |
32 |
atggtttattatattatgtaacatgactgcgcctatatttaactatgcagtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagt |
131 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6488229 |
atggtttattacattatgtaacatgactgcgcctatatttaactatgcagtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagt |
6488328 |
T |
|
| Q |
132 |
gaaactacaaatagtggcttcttcaaatcactgcaaaaaggcttccaaacatgtggcaaccattgcaaatccctaaaccaaacacatact |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6488329 |
gaaactacaaatagtggcttcttcaaatcactgcaaaaaggcttccaaacatgtggcaaccattgcaaatccctaaaccaaacacatact |
6488418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 81 - 221
Target Start/End: Complemental strand, 8382370 - 8382230
Alignment:
| Q |
81 |
gtgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaatagtggcttcttcaaatcactgcaaaaaggcttccaaa |
180 |
Q |
| |
|
||||||||| ||||||| ||||||| |||| ||| |||||||| ||||||| |||| ||||| |||| | | |||||| ||||||||||||| ||| |
|
|
| T |
8382370 |
gtgccatttccacatcaagccaaaatcacggcaggaactcacgtttgcagtgaagctacgtatagtagcttttccgaatcacggcaaaaaggcttcaaaa |
8382271 |
T |
|
| Q |
181 |
catgtggcaaccattgcaaatccctaaaccaaacacatact |
221 |
Q |
| |
|
| || |||| |||||| ||| | |||||||||||||||||| |
|
|
| T |
8382270 |
cgtgcggcagccattggaaaactctaaaccaaacacatact |
8382230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 31834959 - 31834820
Alignment:
| Q |
82 |
tgccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactac--aaatagtggcttcttcaaatcactgcaaaaaggcttccaa |
179 |
Q |
| |
|
|||||||||||||||||| |||||| | |||||| ||||||||||| |||| |||| | ||||| |||| |||||||||| | | ||||| ||| || |
|
|
| T |
31834959 |
tgccattttcacatcaggtcaaaaccacgacaagaactcacgtttccaatgaagctacatatatagtagctttttcaaatcacggaacaaaggtttcaaa |
31834860 |
T |
|
| Q |
180 |
acatgtggcaaccattgcaaatccctaaaccaaacacata |
219 |
Q |
| |
|
|| |||| || ||||||||| | |||||||||||||||| |
|
|
| T |
31834859 |
acgtgtgtcagtcattgcaaaactctaaaccaaacacata |
31834820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 42351823 - 42351740
Alignment:
| Q |
84 |
ccattttcacatcaggccaaaactttggcaagaagtcacgtttccagtgaaactacaaatagtggcttcttcaaatcactgcaa |
167 |
Q |
| |
|
|||||||||||||| ||||||| |||| ||| |||||||| ||||||| ||||| ||||| |||| |||||||||| |||| |
|
|
| T |
42351823 |
ccattttcacatcaagccaaaatcacggcaggaattcacgtttgcagtgaagctacatatagttgctttttcaaatcacggcaa |
42351740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University