View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_67 (Length: 237)

Name: NF17742_low_67
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_67
NF17742_low_67
[»] chr6 (2 HSPs)
chr6 (1-222)||(34217149-34217364)
chr6 (157-210)||(10241785-10241838)
[»] chr8 (2 HSPs)
chr8 (156-222)||(2683385-2683451)
chr8 (52-150)||(9684650-9684748)
[»] chr4 (1 HSPs)
chr4 (157-222)||(5479861-5479926)
[»] chr2 (2 HSPs)
chr2 (157-222)||(45006811-45006876)
chr2 (157-222)||(25575557-25575622)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34217149 - 34217364
Alignment:
Q  1 atgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctctttagcac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217149 atgatggaaaaatattttttactcgccggttcctatagataaaattcaccattgatgagaggaacaaaacagatggggtctcaccttatctctttagcac 34217248  T
Q  101 caactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgtaaatgtaaatgtaaatgtaccaattgcacccgaaattttacttcagtatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  34217249 caactaaaggcatgtcccatgtccgacaaaaatacaacaccaacac------atgtaaatgtaaatgtaccaattgcacccgaaattttacttcagtatt 34217342  T
Q  201 acaatctacacaatgtaaatgt 222  Q
    ||||||||||||||||||||||    
T  34217343 acaatctacacaatgtaaatgt 34217364  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 210
Target Start/End: Original strand, 10241785 - 10241838
Alignment:
Q  157 aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctaca 210  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10241785 aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctaca 10241838  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 156 - 222
Target Start/End: Complemental strand, 2683451 - 2683385
Alignment:
Q  156 taaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 222  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2683451 taaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 2683385  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 150
Target Start/End: Complemental strand, 9684748 - 9684650
Alignment:
Q  52 ttgatgagaggaacaaaacagatggggtctcaccttatctctttagcaccaactaaaggcatgtcccatgtccgacaaaaatacaacaccaacacatgt 150  Q
    |||||||||||||||||| ||||||||||||||||||| |||   ||||| || |||||| ||||   |||| |||| |||||||||||||||||||||    
T  9684748 ttgatgagaggaacaaaatagatggggtctcaccttatatctgatgcaccgaccaaaggcgtgtcttgtgtctgacacaaatacaacaccaacacatgt 9684650  T

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Target: chr4 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 5479861 - 5479926
Alignment:
Q  157 aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5479861 aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 5479926  T

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Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 45006876 - 45006811
Alignment:
Q  157 aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 222  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  45006876 aaatgtaaatgtaccaactgcacccgaaattttacttcagtattacattctacacaatgtaaatgt 45006811  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 157 - 222
Target Start/End: Original strand, 25575557 - 25575622
Alignment:
Q  157 aaatgtaaatgtaccaattgcacccgaaattttacttcagtattacaatctacacaatgtaaatgt 222  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||    
T  25575557 aaatgtaaatgtaccaactgcacccgaaattttacttcactattacaatctaaacaatttaaatgt 25575622  T

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