View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_7 (Length: 522)

Name: NF17742_low_7
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_7
NF17742_low_7
[»] chr5 (5 HSPs)
chr5 (18-513)||(29712302-29712797)
chr5 (126-323)||(29696064-29696261)
chr5 (186-400)||(29688023-29688240)
chr5 (133-202)||(42562478-42562547)
chr5 (21-87)||(29687804-29687870)
[»] chr3 (1 HSPs)
chr3 (127-302)||(47451954-47452129)
[»] chr1 (3 HSPs)
chr1 (359-394)||(24340475-24340510)
chr1 (359-394)||(24352840-24352875)
chr1 (260-302)||(24310163-24310205)
[»] chr4 (6 HSPs)
chr4 (128-165)||(7771261-7771298)
chr4 (128-165)||(7904890-7904927)
chr4 (133-165)||(7774010-7774042)
chr4 (133-165)||(7789951-7789983)
chr4 (359-399)||(48852757-48852797)
chr4 (128-216)||(48875700-48875788)


Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 18 - 513
Target Start/End: Complemental strand, 29712797 - 29712302
Alignment:
Q  18 aactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattttttgcttccacagtct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712797 aactccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattcattgaatattaattttttgcttccacagtct 29712698  T
Q  118 tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712697 tttacacaacttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaat 29712598  T
Q  218 atataccaaactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtc 317  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712597 atataccaaattctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtc 29712498  T
Q  318 atatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29712497 atatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgtggaacgaaattgagggtgataattatttctcttat 29712398  T
Q  418 tgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaacggggctattcactggttggctctttgtgatgat 513  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  29712397 tgcctggcccgtgaaaattccaaagtagagccgttcttaaatggggctattcacttcttaaatggggctattcactggttggctctttgttatgat 29712302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 126 - 323
Target Start/End: Original strand, 29696064 - 29696261
Alignment:
Q  126 acttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatatacca 225  Q
    ||||||| ||||||||||||||||||| |||||||||||||  |||   ||| | |||||| |||||||||||||||| ||| ||||||||   |||||     
T  29696064 acttgattttaaaggttcgtgtagaggctttatacttttgaactgttactcaagcctctgtatatggaatccatccaccggatttcacaaacgaatacct 29696163  T
Q  226 aactctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattacttcgtgctttccatgtcatatga 323  Q
        ||   ||||||| ||||  ||||||| || |||| |||||||||||||||||||||||||  ||||||||||| ||| |||| ||||| |||||    
T  29696164 tttactacaattgattccaatccagatgcaaattatttctatggttttgggtatgacgagtcaacagatgattacttggtgatttcaatgtcctatga 29696261  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 186 - 400
Target Start/End: Original strand, 29688023 - 29688240
Alignment:
Q  186 tctatggaatccatccactggagttcacaaatatataccaa--act-ctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgac 282  Q
    |||||||||||||||||| |||||||||| | | |||||    ||| || ||||||||| ||||||||| ||| |  |||| |||||||||||||||||     
T  29688023 tctatggaatccatccaccggagttcacagacaaataccctttactactgttattgattccaatttagaagcaaagtatttctatggttttgggtatgat 29688122  T
Q  283 gagtcaagggatgattacttcgtgctttccatgtcatatgatcccaatgcttatgataagttaactcgcttagggcttttctcattgagagctgatgcgt 382  Q
    ||||| |  ||||||||| | || ||||| ||||  |||||||| | |||   || |  |||| ||| ||| |||||||||||||| |||||| || |||    
T  29688123 gagtctactgatgattacctggttctttcaatgtgctatgatccgagtgcacgtggtttgttatctcacttggggcttttctcattaagagctaatacgt 29688222  T
Q  383 ggaacgaaattgagggtg 400  Q
    |||| ||||| |||||||    
T  29688223 ggaaggaaatggagggtg 29688240  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 133 - 202
Target Start/End: Complemental strand, 42562547 - 42562478
Alignment:
Q  133 attaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatcca 202  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||  |||  ||||||||||||||||    
T  42562547 attaaaggttcgtgtagagggtttatacttttgcattgtggtgcatgcttctacctatggaatccatcca 42562478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 29687804 - 29687870
Alignment:
Q  21 tccaaatctggaatctctatctattgatttggaaacatcactctacgatgatagtgcttcctattca 87  Q
    |||| |||| |||||||||||||| ||||| |||||||| ||  |||||||||||||||| ||||||    
T  29687804 tccagatcttgaatctctatctatagattttgaaacatcgcttcacgatgatagtgcttcttattca 29687870  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 127 - 302
Target Start/End: Complemental strand, 47452129 - 47451954
Alignment:
Q  127 cttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaatatataccaa 226  Q
    ||||| ||||||||||| |||||||||||||||||||| ||||||  ||||    |||   ||||||||||||||||||||||||||||| | |||||      
T  47452129 cttgaaattaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctt 47452030  T
Q  227 actctcttattgattgcaatttagatgcatatcatttatatggttttgggtatgacgagtcaagggatgattactt 302  Q
       ||| | ||| || |||| |||||||| || |||| ||| | |||||||||||||||| ||  |||||||||||    
T  47452029 tgcctccttttggttccaatgtagatgcaaattatttttattggtttgggtatgacgagttaacagatgattactt 47451954  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 24340475 - 24340510
Alignment:
Q  359 ttttctcattgagagctgatgcgtggaacgaaattg 394  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24340475 ttttctcattgagagctaatgcgtggaacgaaattg 24340510  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 394
Target Start/End: Original strand, 24352840 - 24352875
Alignment:
Q  359 ttttctcattgagagctgatgcgtggaacgaaattg 394  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24352840 ttttctcattgagagctaatgcgtggaacgaaattg 24352875  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 260 - 302
Target Start/End: Original strand, 24310163 - 24310205
Alignment:
Q  260 atttatatggttttgggtatgacgagtcaagggatgattactt 302  Q
    |||| ||||||||||| |||||||||||||| |||||||||||    
T  24310163 atttctatggttttggttatgacgagtcaagagatgattactt 24310205  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 7771261 - 7771298
Alignment:
Q  128 ttgatattaaaggttcgtgtagagggtttatacttttg 165  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7771261 ttgaaattagaggttcgtgtagagggtttatacttttg 7771298  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 165
Target Start/End: Original strand, 7904890 - 7904927
Alignment:
Q  128 ttgatattaaaggttcgtgtagagggtttatacttttg 165  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  7904890 ttgaaattagaggttcgtgtagagggtttatacttttg 7904927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 165
Target Start/End: Complemental strand, 7774042 - 7774010
Alignment:
Q  133 attaaaggttcgtgtagagggtttatacttttg 165  Q
    |||| ||||||||||||||||||||||||||||    
T  7774042 attagaggttcgtgtagagggtttatacttttg 7774010  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 133 - 165
Target Start/End: Original strand, 7789951 - 7789983
Alignment:
Q  133 attaaaggttcgtgtagagggtttatacttttg 165  Q
    |||| ||||||||||||||||||||||||||||    
T  7789951 attagaggttcgtgtagagggtttatacttttg 7789983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 359 - 399
Target Start/End: Original strand, 48852757 - 48852797
Alignment:
Q  359 ttttctcattgagagctgatgcgtggaacgaaattgagggt 399  Q
    ||||||||||||||||| |||| ||||| ||||||||||||    
T  48852757 ttttctcattgagagctaatgcatggaaagaaattgagggt 48852797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 216
Target Start/End: Original strand, 48875700 - 48875788
Alignment:
Q  128 ttgatattaaaggttcgtgtagagggtttatacttttgagttgtggttcatgtctctgtctatggaatccatccactggagttcacaaa 216  Q
    |||| ||||||||||| || ||||| |||||||| |||  ||||  |||| | ||||  ||||||||||||||||| ||| ||||||||    
T  48875700 ttgaaattaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaa 48875788  T

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