View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_70 (Length: 231)
Name: NF17742_low_70
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_70 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 36373963 - 36374171
Alignment:
| Q |
18 |
atgtgatatcatatgttttttagtttagttttgatatcctatctgtataaaatgttttacactgtcaacaaaatca-----tagtttgattgactgttga |
112 |
Q |
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| T |
36373963 |
atgtgatatcatatgttttttagtttagttttgatatcctatctgtataaaatgttttacactgtcaacaaaatcagtcagtcatatgattgacagttga |
36374062 |
T |
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| Q |
113 |
accatttatggttgaagtcaaatatgtttaatgatatgacaattataatatataggtggtgtaaagaagttttacactcacaatatatatgatttaaata |
212 |
Q |
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| T |
36374063 |
accatttatggttgaagtcaaatatgtttaatgatatgacagttatgatttataggcagtgtacagaagttttacactcac-atatatatgatataaata |
36374161 |
T |
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| Q |
213 |
cgttgttttt |
222 |
Q |
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| T |
36374162 |
ctttgttttt |
36374171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 12070085 - 12069974
Alignment:
| Q |
109 |
ttgaaccatttatggttgaagtcaaatatgtttaatgatatgacaattataatatataggtggtgtaaagaagttttacactcacaatatatatgattta |
208 |
Q |
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||||||||||||||||| ||||||||||||||||| ||| |||||||||| || |||| |||| | | ||||| | ||||||||||||||| ||| |
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| T |
12070085 |
ttgaaccatttatggttcaagtcaaatatgtttaaggatgtgacaattatgattgatagacagtgtgcaaatgtttt--agtcacaatatatatgaatta |
12069988 |
T |
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| Q |
209 |
aatacgttgttttt |
222 |
Q |
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| T |
12069987 |
aatactttgttttt |
12069974 |
T |
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