View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17742_low_71 (Length: 230)

Name: NF17742_low_71
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17742_low_71
NF17742_low_71
[»] chr4 (3 HSPs)
chr4 (14-188)||(22339490-22339664)
chr4 (64-142)||(50882036-50882114)
chr4 (64-142)||(16635416-16635494)
[»] chr8 (1 HSPs)
chr8 (64-142)||(40755860-40755938)
[»] chr1 (2 HSPs)
chr1 (64-128)||(7589224-7589288)
chr1 (64-166)||(24067860-24067962)
[»] chr3 (1 HSPs)
chr3 (64-167)||(23046330-23046433)
[»] chr2 (1 HSPs)
chr2 (64-142)||(23689061-23689139)
[»] scaffold0267 (1 HSPs)
scaffold0267 (64-140)||(8615-8691)
[»] chr5 (1 HSPs)
chr5 (64-142)||(19183638-19183716)
[»] scaffold0650 (1 HSPs)
scaffold0650 (67-142)||(6516-6591)
[»] scaffold0453 (1 HSPs)
scaffold0453 (64-128)||(9396-9460)
[»] chr7 (1 HSPs)
chr7 (64-128)||(7157465-7157529)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 14 - 188
Target Start/End: Original strand, 22339490 - 22339664
Alignment:
Q  14 aagacaagttgggatttgtattttcttccnnnnnnncgccctttttcatcaaatagacacacaaaatcagcataactttgcaaggatctataaaatcgag 113  Q
    |||||||| ||||||||||||||||||||       ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22339490 aagacaagctgggatttgtattttcttcctttttttcgcactttttcatcaaatagacatacaaaatcagcataactttgcaaggatctataaaatcgag 22339589  T
Q  114 atcaaaacatgtgtacgtcaagctaaaatggtaatacatcttaagtgttatcaccattttgatgcaagttcatac 188  Q
    |||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22339590 atcaaaacatgtgtaaatcgagctaaaatggtaatacatcttaagtgttatcaccattttgatgcaagttcatac 22339664  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 64 - 142
Target Start/End: Original strand, 50882036 - 50882114
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    |||||||||||||| | ||||||||| ||||||  ||||||||||||||||||||||||||| || ||| |||||||||    
T  50882036 aaatagacacacaataccagcataacattgcaaaaatctataaaatcgagatcaaaacatgtataagtcgagctaaaat 50882114  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 16635494 - 16635416
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    |||||||||| ||| | ||||||||| ||||||  |||||||||||||||||||||| ||||||| ||| |||||||||    
T  16635494 aaatagacacgcaataccagcataacattgcaaaaatctataaaatcgagatcaaaaaatgtgtaagtcgagctaaaat 16635416  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 40755938 - 40755860
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    |||||||||||||| | ||||||||| ||||||  ||||||||||||||||| |||| ||||||| ||| |||||||||    
T  40755938 aaatagacacacaataccagcataacattgcaaaaatctataaaatcgagataaaaaaatgtgtaagtcgagctaaaat 40755860  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 7589224 - 7589288
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgta 128  Q
    |||||||||||||| | ||||||||| ||||||  |||||||||||||||||||||| |||||||    
T  7589224 aaatagacacacaataccagcataacattgcaaaaatctataaaatcgagatcaaaaaatgtgta 7589288  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 24067962 - 24067860
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaatggtaatacatcttaagtgtta 163  Q
    |||||||||||||| | || ||||||  |||||  |||| ||||||| | ||||||||||||||| ||| ||||||||  ||||| ||| ||| ||||||    
T  24067962 aaatagacacacaataccaacataacaatgcaaaaatctgtaaaatcaaaatcaaaacatgtgtaagtcgagctaaaaaagtaatgcattttacgtgtta 24067863  T
Q  164 tca 166  Q
    |||    
T  24067862 tca 24067860  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 64 - 167
Target Start/End: Complemental strand, 23046433 - 23046330
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaatggtaatacatcttaagtgtta 163  Q
    |||||||||||||| | || |||||| ||||||  ||||||||||||||||| |||| ||||||| ||| |||||||||  || | ||| ||| ||||||    
T  23046433 aaatagacacacaataccaacataacattgcaaaaatctataaaatcgagataaaaaaatgtgtaagtcgagctaaaataatattgcattttacgtgtta 23046334  T
Q  164 tcac 167  Q
    ||||    
T  23046333 tcac 23046330  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 23689139 - 23689061
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    |||||||||||||| | || |||||| ||||||  |||||||||||||||||||||| || |||| ||| |||||||||    
T  23689139 aaatagacacacaataccatcataacattgcaaatatctataaaatcgagatcaaaaaatatgtaagtcgagctaaaat 23689061  T

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Target: scaffold0267 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 140
Target Start/End: Original strand, 8615 - 8691
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaa 140  Q
    |||||||||||||| | ||||||||| ||||||  ||||||||||||| ||||||||| | |||| ||| |||||||    
T  8615 aaatagacacacaataccagcataacattgcaaaaatctataaaatcgtgatcaaaacttctgtaagtcgagctaaa 8691  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 64 - 142
Target Start/End: Complemental strand, 19183716 - 19183638
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    |||||||||||||| | ||| ||||  ||||||  |||||||||||| ||||||||| ||||||| ||| |||||||||    
T  19183716 aaatagacacacaataccagtataaaattgcaaaaatctataaaatcaagatcaaaaaatgtgtaagtcgagctaaaat 19183638  T

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Target: scaffold0650 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 142
Target Start/End: Complemental strand, 6591 - 6516
Alignment:
Q  67 tagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgtacgtcaagctaaaat 142  Q
    ||||||||||| | ||||||||| ||||||  ||||||||||||||||| |||| | ||||| ||  |||||||||    
T  6591 tagacacacaataccagcataacattgcaaaaatctataaaatcgagataaaaaaaagtgtaagttgagctaaaat 6516  T

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Target: scaffold0453 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 9460 - 9396
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgta 128  Q
    |||||||||||||| | ||||||||| ||||||  || ||||||||| | ||||||| |||||||    
T  9460 aaatagacacacaataccagcataacattgcaaaaatttataaaatcaaaatcaaaaaatgtgta 9396  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 128
Target Start/End: Complemental strand, 7157529 - 7157465
Alignment:
Q  64 aaatagacacacaaaatcagcataactttgcaaggatctataaaatcgagatcaaaacatgtgta 128  Q
    |||||||||||||| | ||||||||| ||||||  || ||||||||| | ||||||| |||||||    
T  7157529 aaatagacacacaataccagcataacattgcaaaaatttataaaatcaaaatcaaaaaatgtgta 7157465  T

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