View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_72 (Length: 227)
Name: NF17742_low_72
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_72 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 15084256 - 15084036
Alignment:
| Q |
7 |
aaaccatgtgtccaaaaagtaacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
106 |
Q |
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| T |
15084256 |
aaaccatgtgtccaaaaagttacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
15084157 |
T |
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| Q |
107 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
206 |
Q |
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| T |
15084156 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattcaaaatgaccaatttgccactatc |
15084057 |
T |
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| Q |
207 |
ttcaatttcaactgatgtacc |
227 |
Q |
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|| ||||| |||||||||||| |
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| T |
15084056 |
ttgaattttaactgatgtacc |
15084036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 211
Target Start/End: Complemental strand, 15088079 - 15087875
Alignment:
| Q |
7 |
aaaccatgtgtccaaaaagtaacactatcattccaaatcaaactcaaattaccaatctttgcaagactaaaactataatcaccagatttcaataccttac |
106 |
Q |
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|||||||| ||||||||||| | ||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||| |
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| T |
15088079 |
aaaccatgagtccaaaaagttatactatcattccaaatcaaattcaaattaccattctttccaagactaaaactataatcaccagatttcaaaatcttac |
15087980 |
T |
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| Q |
107 |
caacactaaaatttgtagatggcaaaagggtatctgtaagatgatcaaagcttgaccaaacttcctttgtcccattgaaaatgaccaatttgccactatc |
206 |
Q |
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| T |
15087979 |
caacagtaaaattctgagaaggcaaaagggtatctgtaagatgatcaaagctcgaccaaacttcctttgttccgttcaaaatcgccaatttaccactgtc |
15087880 |
T |
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| Q |
207 |
ttcaa |
211 |
Q |
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||||| |
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| T |
15087879 |
ttcaa |
15087875 |
T |
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