View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_73 (Length: 226)
Name: NF17742_low_73
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_73 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 53491707 - 53491916
Alignment:
| Q |
1 |
agttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491707 |
agttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctc |
53491806 |
T |
|
| Q |
101 |
aaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491807 |
aaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcattacagat |
53491906 |
T |
|
| Q |
201 |
gccaaagatg |
210 |
Q |
| |
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|||||||||| |
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| T |
53491907 |
gccaaagatg |
53491916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 53499300 - 53499468
Alignment:
| Q |
1 |
agttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctc |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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| T |
53499300 |
agttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagcaaacttttgtccc |
53499399 |
T |
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| Q |
101 |
aaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
169 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53499400 |
aagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 16070408 - 16070576
Alignment:
| Q |
1 |
agttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctc |
100 |
Q |
| |
|
||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |||||||||||||||| | |
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| T |
16070408 |
agttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttctcagcaaacttttgtccc |
16070507 |
T |
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| Q |
101 |
aaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
169 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070508 |
aaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 45355067 - 45354908
Alignment:
| Q |
1 |
agttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttttgtctc |
100 |
Q |
| |
|
|||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| ||||||| | |
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| T |
45355067 |
agttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaattttgtccc |
45354968 |
T |
|
| Q |
101 |
aaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
160 |
Q |
| |
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|||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354967 |
aaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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