View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_74 (Length: 220)
Name: NF17742_low_74
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_74 |
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Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 31423766 - 31423694
Alignment:
| Q |
10 |
acatcatcaccagccacaccaacaaccaccttgcaccaccatctctgttgttcccgctgacggcaccctctct |
82 |
Q |
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| T |
31423766 |
acatcatcaccagccataccaacaaccaccttgcaccaccatctctgttgttcccgctgacggcaccctctct |
31423694 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 148 - 202
Target Start/End: Complemental strand, 31423628 - 31423574
Alignment:
| Q |
148 |
tcaacattcaaactcagcaaccacctcaaaatctgtgaacaacaaaacaaccgtg |
202 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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| T |
31423628 |
tcaacattcaaactcagcaaccacctcaaaatccgtgaacaacaacacaaccgtg |
31423574 |
T |
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