View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_77 (Length: 213)
Name: NF17742_low_77
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_77 |
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Alignment Details
Target: chr2 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 124 - 192
Target Start/End: Original strand, 41900441 - 41900509
Alignment:
| Q |
124 |
cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacatgcttaggttg |
192 |
Q |
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| T |
41900441 |
cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttatagacatacttaggttg |
41900509 |
T |
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Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900319 - 41900377
Alignment:
| Q |
2 |
ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga |
60 |
Q |
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| T |
41900319 |
ggtgaaggagagggaggtggaggagatttgtagacatatggtggaggaagtgaaggaga |
41900377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 182
Target Start/End: Original strand, 41900249 - 41900307
Alignment:
| Q |
124 |
cttgtagatgtaagaaaggggtagttttgcagatggtggaggaggagacttatagacat |
182 |
Q |
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| T |
41900249 |
cttgtagatgtaagaaaggggtagtgatgcagatggtggaggaggagacttgtagacat |
41900307 |
T |
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Target: chr2; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900511 - 41900569
Alignment:
| Q |
2 |
ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga |
60 |
Q |
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| T |
41900511 |
ggtgatggagagggaggtggaggagatttgtagacatatggcggaggaggtgaaggaga |
41900569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 2 - 60
Target Start/End: Original strand, 41900127 - 41900185
Alignment:
| Q |
2 |
ggtgatggagagggaggtgaaggagatttgtagacatatggtggaggaagtgaaggaga |
60 |
Q |
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| T |
41900127 |
ggtgaaggagagggaggtggaggagatttgtagacatacggtggaggaggtgagggaga |
41900185 |
T |
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