View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17742_low_9 (Length: 507)
Name: NF17742_low_9
Description: NF17742
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17742_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 495
Target Start/End: Complemental strand, 33063816 - 33063339
Alignment:
| Q |
14 |
ttactatcacgaatcaagagtcggatgaaaatgaaccatacaagttgaagttaaaatgaatatgtgaagatacaacagttgatttcaacttagttggtaa |
113 |
Q |
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| T |
33063816 |
ttactatcacgaatcaagagtcggatgaaaatgaaccagacaagttgaagttaaaatgaatatgtgaagatacaacaattgatttcaacttagttggtaa |
33063717 |
T |
|
| Q |
114 |
ataaataataatttctatgtaaatgataaaactttaagaaatacattttatgaggatgaatgcatcttgagacttggaaagtcgcaaaatttgtgatata |
213 |
Q |
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| T |
33063716 |
ataaatgataatttctatgtaaatgataaaactt--agaaatacattttatgaggatgaatgcatcttgagacttggaaagtcgcaaaatttgtgatata |
33063619 |
T |
|
| Q |
214 |
catgattgaaagtcatttctcctctaaatgaggatgagaaagatcctcattccttaagtgatcatatagagagttgatgaatctccaatcatacatatcc |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
33063618 |
catgattgaaagtcatttctcctctaaatgaggatgagaaagatcctcattccttaagtgatcatatagag--ttgatgaatctccaatcatacatatcc |
33063521 |
T |
|
| Q |
314 |
tagattagagacggactaggaggtgacaaaatagctggatttattaaatttgaatttagatgataatgaatagattaaaacaatccatcaatcaagtatt |
413 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33063520 |
tagattagagacggactaagaggtgacaaaatagctggatttattaaatttgaatttagatgataatgaatagattaaaacaatccatcaatcaagtatt |
33063421 |
T |
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| Q |
414 |
ccctaaaaactctttaacaaaatttaatacaatacacattctcttaacaaaacaccataacaccagtttgtaaggtgatgat |
495 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33063420 |
cactaaaaactctttaacaaaatttaatacaatacacattctcttaacaaaaccccataacaccagtttgtaaggtgatgat |
33063339 |
T |
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