View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17743_high_19 (Length: 311)

Name: NF17743_high_19
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17743_high_19
NF17743_high_19
[»] chr6 (8 HSPs)
chr6 (12-295)||(6504765-6505048)
chr6 (9-277)||(6464618-6464883)
chr6 (9-277)||(6473671-6473936)
chr6 (9-277)||(6462449-6462714)
chr6 (12-206)||(6516812-6517003)
chr6 (9-276)||(6495958-6496222)
chr6 (9-276)||(6525656-6525920)
chr6 (9-180)||(6456658-6456826)
[»] chr7 (1 HSPs)
chr7 (30-81)||(3754649-3754700)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 12 - 295
Target Start/End: Original strand, 6504765 - 6505048
Alignment:
Q  12 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacacc 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6504765 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacacc 6504864  T
Q  112 accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6504865 accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtataagc 6504964  T
Q  212 tgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgttattccacacaactcccact 295  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||    
T  6504965 tgaattcctgtcctagcttctctccattcaggtggagcaaaccaaagtccactatctcttttattattccacaaaactcccact 6505048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 277
Target Start/End: Original strand, 6464618 - 6464883
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| | ||| |  || || ||||||||||||||||     
T  6464618 catcatcaaaaccattcaagcttcttatcttcttcaatccactttcattatcataaactccttccaaggcatagacaaaccctttccatccttctccaa- 6464716  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtata 208  Q
      |||||||||||||||||||||||||||||||||| ||||| || || ||| |||||||||  ||||| ||   ||||||||| |||  ||||||||      
T  6464717 --caccttccctattcaaagcaggcaatgtccactccacaagttccttcacaaaatcaacatttgaaaataagaattcagaaattggaagcaatggtaag 6464814  T
Q  209 agctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtta 277  Q
    |||||||| ||   ||||  |||| |||||||||  ||||||||||| | |||||| ||||| ||||||    
T  6464815 agctgaatcccaagcctacattctttccattcaggaggagcaaaccataatccactgtctctcttgtta 6464883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 6473936 - 6473671
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    |||||||||| | |||||| ||| |||| ||||||||| |||||||||||||||||||||||| ||||| ||| |  || || |||||||||||| ||||    
T  6473936 catcatcaaatctattcaaactttttatattcttcaatccactttcattatcataaattccttgcaatgcatagacaaaacctttccatccttcttcaac 6473837  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtata 208  Q
    |||   ||||||||| |||||| ||||||||||||| ||||| || || |||||||||||||| ||||||||| ||||||||||||||  ||||||||      
T  6473836 acc---ttccctatttaaagcaagcaatgtccactccacaagttccttcacataatcaacatctgaaaacaaaacttcagaaataggaatcaatggtagg 6473740  T
Q  209 agctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtta 277  Q
    |||||||||||   ||||  |||| ||||| |||| ||||||||||| | |||||| ||||| ||||||    
T  6473739 agctgaattccaagcctacattctttccatgcagccggagcaaaccataatccactgtctctcttgtta 6473671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 277
Target Start/End: Complemental strand, 6462714 - 6462449
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    |||||||||| || || ||  ||||||| |||||||||||| |||| ||||||||||||||||  || | |||||  || || |||||||||||| ||||    
T  6462714 catcatcaaatccttttaaatttcttatattcttcaatgcagtttccttatcataaattccttgtaaagcatatacaaaccctttccatccttcttcaac 6462615  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtata 208  Q
    |||| ||   || |||||||||||||||||||| |||||||| |  || ||||| ||||||||||| |||||  |||||||||||||| |||||||||      
T  6462614 accatct---cttttcaaagcaggcaatgtccattcaacaagttgcttcacatattcaacatcagagaacaatacttcagaaataggaaccaatggtaag 6462518  T
Q  209 agctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtta 277  Q
    |||||||||||    |||  ||||||  |||||| ||||||||||||||||||||| ||||| ||||||    
T  6462517 agctgaattccaagtctacattctctatattcaggtggagcaaaccaaagtccactttctctcttgtta 6462449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 6517003 - 6516812
Alignment:
Q  12 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaacacc 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||| ||||||  | |    || |    
T  6517003 catcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgcataccgaaatcccgtccatctgttt---tcagc 6516907  T
Q  112 accttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggta 206  Q
    ||||  | | || |||| |||||||| |||||||||||| ||||| |||||||||||||||||||| ||| |||||||||| |||  ||||||||    
T  6516906 acctaacgttttgaaaggaggcaatgcccactcaacaagttctttcacataatcaacatcagaaaataaaacttcagaaattggacacaatggta 6516812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 6495958 - 6496222
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    |||||||||| || || ||  ||||||| |||||||||||| |||| ||||||||||||||||  || | |||||  || || |||||||||||| ||||    
T  6495958 catcatcaaatccttttaaatttcttatattcttcaatgcattttccttatcataaattccttgtaaggcatatacaaaccctttccatccttcttcaac 6496057  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtata 208  Q
    |||| ||   || |||||||||||||||| ||| |||||||| |  || ||||| || |||||||| |||||  ||||||||||||||  ||||||||      
T  6496058 accatct---cttttcaaagcaggcaatgcccattcaacaagttgcttcacatattcgacatcagagaacaatacttcagaaataggaagcaatggtaag 6496154  T
Q  209 agctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtt 276  Q
    ||||||| |||   ||||  |||| |  |||| | ||||||||||||||||||||| ||||| |||||    
T  6496155 agctgaactccaaccctacattctttatattccggtggagcaaaccaaagtccactttctctcttgtt 6496222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 6525656 - 6525920
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    ||||||||||||| |||||  |||||||||||| |  ||||||||||||||||||||| |||| ||| | ||| |  || |||||||| || ||| ||||    
T  6525656 catcatcaaaacccttcaactttcttatcttctgctgtgcactttcattatcataaatcccttgcaaggcataaacaaaccccttccaaccctcttcaac 6525755  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaaatcttcagaaataggagccaatggtata 208  Q
    ||||   ||||| || |||||||| ||||||||||| |||||  | || |||||   ||||||||| |||||  |||||||||| |||  ||||||||      
T  6525756 acca---tccctttttaaagcaggtaatgtccactccacaagtcccttcacatacataacatcagagaacaagacttcagaaattggaagcaatggtaag 6525852  T
Q  209 agctgaattcctgtcctagcttctctccattcagctggagcaaaccaaagtccactatctcttttgtt 276  Q
    |||||||| ||   ||||  |||| |||||||||||||| ||||||| |  ||||| |||||||||||    
T  6525853 agctgaatcccaagcctacattctttccattcagctggaccaaaccataaaccactgtctcttttgtt 6525920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 180
Target Start/End: Original strand, 6456658 - 6456826
Alignment:
Q  9 catcatcaaaaccattcaagcttcttatcttcttcaatgcactttcattatcataaattccttccaatgaatataagaatcccttccatccttctccaac 108  Q
    ||||||||||||| ||||| | ||||| ||| | ||| |||||||  ||||||||| | |||||||  | |||||  || || ||||| ||||| ||||     
T  6456658 catcatcaaaacccttcaatcctcttaccttttgcaaagcactttgtttatcataagtaccttccatagcatatataaaacctttccacccttcaccaa- 6456756  T
Q  109 accaccttccctattcaaagcaggcaatgtccactcaacaagatctttaacataatcaacatcagaaaacaa 180  Q
      |||||| ||||||||||  ||| |||||||| || ||||| || || |||||| ||||||| ||||||||    
T  6456757 --cacctttcctattcaaattaggtaatgtccattccacaagctcctttacataaccaacatccgaaaacaa 6456826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 81
Target Start/End: Complemental strand, 3754700 - 3754649
Alignment:
Q  30 ttcttatcttcttcaatgcactttcattatcataaattccttccaatgaata 81  Q
    |||| ||||||||||||||| |||| |||||||||||||||| ||| |||||    
T  3754700 ttctaatcttcttcaatgcattttctttatcataaattccttgcaaagaata 3754649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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