View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_high_20 (Length: 310)
Name: NF17743_high_20
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_high_20 |
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| [»] scaffold0363 (1 HSPs) |
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Alignment Details
Target: scaffold0363 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 296
Target Start/End: Original strand, 11745 - 11992
Alignment:
| Q |
49 |
aagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagttaaggagggagataaaacaaatatttggttca |
148 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||| |
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| T |
11745 |
aagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttca |
11844 |
T |
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| Q |
149 |
tcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaa |
248 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| |
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| T |
11845 |
tcatatggttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaa |
11944 |
T |
|
| Q |
249 |
gcaatttacaatcatgaatttcaacgagtttgagttggggaagatact |
296 |
Q |
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| T |
11945 |
gcaatttacaatcatgaatatcaacgaatttgagttggggaagatact |
11992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 200; Significance: 1e-109; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 49 - 296
Target Start/End: Complemental strand, 14407108 - 14406861
Alignment:
| Q |
49 |
aagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagttaaggagggagataaaacaaatatttggttca |
148 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| || |||||| |
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| T |
14407108 |
aagttcaatcccatccatagcatctttcaaaactgtttggtatgaatgtgaatccatgtttttgcagttaaggagcgagataaaacaaacgttaggttca |
14407009 |
T |
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| Q |
149 |
tcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaa |
248 |
Q |
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| T |
14407008 |
tcatatggttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaccaaaatttgaatgaactgtgaaagtgccggaatagattgaa |
14406909 |
T |
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| Q |
249 |
gcaatttacaatcatgaatttcaacgagtttgagttggggaagatact |
296 |
Q |
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| T |
14406908 |
gcaatttacaatcatgaatatcaacgaatttgagttggggaagatact |
14406861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 52 - 261
Target Start/End: Original strand, 6307989 - 6308198
Alignment:
| Q |
52 |
ttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagttaaggagggagataaaacaaatatttggttcatca |
151 |
Q |
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| T |
6307989 |
ttcaattctatccatagcatctttcaaaactgtttggtatgaatgtggttccaaatttttgcagttaaggagataaataaaacaaggattgggttcctca |
6308088 |
T |
|
| Q |
152 |
tatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatagattgaagca |
251 |
Q |
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||| ||||| ||||||||||||||||| ||||||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
6308089 |
tatggttcaatcgttgaactcaacactttctcaagagattcacaattcgagacaaccaaaactggaatgaactgtgaaagtgccggaatagattgaatca |
6308188 |
T |
|
| Q |
252 |
atttacaatc |
261 |
Q |
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||||||||| |
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| T |
6308189 |
ttttacaatc |
6308198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 258
Target Start/End: Complemental strand, 5553872 - 5553633
Alignment:
| Q |
22 |
ttcattttctgaattttgtcgggctagaagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagttaagg |
121 |
Q |
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||||||||||||||||| || ||| ||||||||| | |||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||| |
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| T |
5553872 |
ttcattttctgaattttctcttgcttcaagttcaatttgaaccatagcatctttcaaaactgtttggtatgaatgtgtatccaaattttggcagttaata |
5553773 |
T |
|
| Q |
122 |
agggagataa---aacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttggaa |
218 |
Q |
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||| | || || ||| | | |||| ||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||| |
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| T |
5553772 |
aggaccacaatataataaagactgggtttgtcatacagttcacccgttgaacttaacacttcctcaagagattcacaatcccagacactcaaatttggaa |
5553673 |
T |
|
| Q |
219 |
tgaactgtgaaagtgccggaatagattgaagcaatttaca |
258 |
Q |
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|||| | |||| |||||||||||||||||||||||||| |
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| T |
5553672 |
tgaagcgataaagcgccggaatagattgaagcaatttaca |
5553633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 5604962 - 5605204
Alignment:
| Q |
18 |
catcttcattttctgaattttgtcgggctagaagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagtt |
117 |
Q |
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||||||||||||||||||||| || ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||| | | |||||| |
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| T |
5604962 |
catcttcattttctgaattttttcttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagtt |
5605061 |
T |
|
| Q |
118 |
aaggaggg-agataaaacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttgg |
216 |
Q |
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|||||| || | | ||| | | |||| |||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||| |||| |
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| T |
5605062 |
aaggagcacagttgatacagg-agtaggtttgtcatatggttcactcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttgg |
5605160 |
T |
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| Q |
217 |
aatgaactgtgaaagtgccggaatagattgaagcaatttacaat |
260 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| |
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| T |
5605161 |
aatgaagcgttgaagtgccggaatagattgaagcaattcacaat |
5605204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 18 - 260
Target Start/End: Complemental strand, 5630408 - 5630166
Alignment:
| Q |
18 |
catcttcattttctgaattttgtcgggctagaagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagtt |
117 |
Q |
| |
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||||||||||||||||||||| || ||| ||||||||||||| |||||| ||||||||||| ||||||||||||||||| ||||| | | |||||| |
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| T |
5630408 |
catcttcattttctgaattttttcttgctccaagttcaatcccacccatagaatctttcaaaactgtttggtatgaatgtggatccaattctacgcagtt |
5630309 |
T |
|
| Q |
118 |
aaggaggg-agataaaacaaatatttggttcatcatatagttcacgcgttgaactcaacacttcctcaagagattcacaattccagacaaacaaagttgg |
216 |
Q |
| |
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|||||| || | | ||| | | |||| |||||| |||||| ||||||||| ||||||||||||||||||||||||| ||||| || ||| |||| |
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| T |
5630308 |
aaggagcacagttgatacagg-agtaggtttgtcatatggttcactcgttgaactgaacacttcctcaagagattcacaatcccagaaaagcaattttgg |
5630210 |
T |
|
| Q |
217 |
aatgaactgtgaaagtgccggaatagattgaagcaatttacaat |
260 |
Q |
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|||||| || |||||||||||||||||||||||||| ||||| |
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| T |
5630209 |
aatgaagcgttgaagtgccggaatagattgaagcaattcacaat |
5630166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5647895 - 5647809
Alignment:
| Q |
18 |
catcttcattttctgaattttgtcgggctagaagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatcca |
104 |
Q |
| |
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| T |
5647895 |
catcttcattttctgaactatgtcttgcttcaagttcaaacccatccatagcctctttcaaaactgtctggtatgaatgtggatcca |
5647809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 123
Target Start/End: Complemental strand, 13167581 - 13167502
Alignment:
| Q |
44 |
gctagaagttcaatcccatccatagcatctttcaaaattgtttggtatgaatgtgaatccatatttttgcagttaaggag |
123 |
Q |
| |
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|||| ||||||||||| ||||||||||| || |||| ||||||||||||||||| ||||| ||| ||||||||||||| |
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| T |
13167581 |
gctacaagttcaatcctttccatagcatcgtttaaaactgtttggtatgaatgtggatccaattttatgcagttaaggag |
13167502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 242
Target Start/End: Complemental strand, 32635579 - 32635509
Alignment:
| Q |
172 |
caacacttcctcaagagattcacaattccagacaaacaaagttggaatgaactgtgaaagtgccggaatag |
242 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| ||| ||||||||||| || ||| |||||||||| |
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| T |
32635579 |
caacactttctcaagagattcacaattcctgacaatgaaaaatggaatgaactttggaagagccggaatag |
32635509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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