View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_high_30 (Length: 215)
Name: NF17743_high_30
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 15 - 200
Target Start/End: Complemental strand, 56232878 - 56232693
Alignment:
| Q |
15 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
114 |
Q |
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| T |
56232878 |
cagagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggc |
56232779 |
T |
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| Q |
115 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgt |
200 |
Q |
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| T |
56232778 |
acgatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttgtgagtgttgt |
56232693 |
T |
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Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 39190823 - 39190640
Alignment:
| Q |
17 |
gagaacatagtaatttgtgcttggttataaccaaggaaacaaagaaagtttaggtaatcattgatgtttaactcatagaccaagccaggatccatggcac |
116 |
Q |
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|||||||| ||||||||| |||||||||||| | ||||||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
39190823 |
gagaacatgctaatttgtgtttggttataacctaagaaacaaagaaagtttatgtaatcattgatgtttaactcatacaccaaaccaggatccatggcac |
39190724 |
T |
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| Q |
117 |
gatttggtctaatgtgaccagaaccgtaagcaaatggtgttgccttgacattagtatcatcgaggataggtttatgagtgttgt |
200 |
Q |
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| T |
39190723 |
gatttggtcttatgtgaccagaaccgtagtcaaatggtgttgccttgacattaatatcatcaacgataggtttaacagtgttgt |
39190640 |
T |
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