View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_high_8 (Length: 518)
Name: NF17743_high_8
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 18 - 508
Target Start/End: Original strand, 43589167 - 43589657
Alignment:
| Q |
18 |
atatctctatttatttatgcccttcatcaaattctttatgtcctcgtggacctatgaaaagccaacaatgggtcctgcagggaattatatcttttgcgtt |
117 |
Q |
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| T |
43589167 |
atatctctatttatttatgcccttcatcaaattctttatgtcctcgtggacctatgaaaagccaacaatgggtcctgcagggacttatatcttttgcgtt |
43589266 |
T |
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| Q |
118 |
acatactggtgtggtgctataatgtacttatagcttgtgtcattaatcacattaagtattatatatagtcaagagagacaacaagtctgttgttttgatg |
217 |
Q |
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| T |
43589267 |
acatactggtgtggtgctataatgtacttatagcttgtgtcattaatcacattaagtattatatatagtcaagagagacaacaagtctgttgttttgatg |
43589366 |
T |
|
| Q |
218 |
gtttttactatttacagacaggtatacgtgcacatgtgatgtgtcaatttcaattgtgtgtacccaaaatattctagactctgaaaaagcttgactcttc |
317 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43589367 |
gtttttactatttacagacaagtatacgtgcacatgtgatgtgtcaatttcaattgtgtgtacccaaaatattctagactctgaaaaagcttgactcttc |
43589466 |
T |
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| Q |
318 |
tcttattttctgctaatcaaattaatttctcatgcattcaagatataaccgtaagtcttgatatcaccacaggatttctttgaattttgcggtgacttct |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43589467 |
tcttattttctgctaatcaaattaatttctcatgcattcaagatataaccgtaagtcttgatatcaccacaggatttctttgaattttgcggtgacttct |
43589566 |
T |
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| Q |
418 |
ttcacttttgtttgtctcactgtcaaatggattggcgcagctcgctctaccataattcgatggattttaagtttgatgactttgtctttat |
508 |
Q |
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| T |
43589567 |
ttcacttttgtttgtctcactgtcaaatggattggcgcagctcgctctaccataattcaatgaattttgagtttagtgactttgtctttat |
43589657 |
T |
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