View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_11 (Length: 487)
Name: NF17743_low_11
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_11 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 451; Significance: 0; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Original strand, 30416 - 30878
Alignment:
| Q |
11 |
agcaaaggggtaggattggaattttgttggattttgtttggtatgaacctcttacaagatcaaaggctgataactatgctgctcaaagagctagagactt |
110 |
Q |
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| T |
30416 |
agcaaaagggtaggattggaattttgttggattttgtttggtatgagcctcttacaagatcaaaggctgataactatgctgctcaaagagctagagactt |
30515 |
T |
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| Q |
111 |
tcatattggatggtaaaaattgttggcttttctagttgaaacaacgccagaagaattgtacctaagttttgtcattttgttaattttgtagtgtgtttta |
210 |
Q |
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| T |
30516 |
tcatattggatggtaaaaattgttggcttttctagttgaaacaacgccagaagaattgtacctaagttttgtcattttgttaatttcgtagtgtgtttta |
30615 |
T |
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| Q |
211 |
agttgtttataaatttccacaggttcattcatccccttgtttatggtgagtatccaagaactatgcaaaatattgttgggaatagactcccaaagtttac |
310 |
Q |
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| T |
30616 |
agttgtttataaatttccacaggttcattcatccccttgtttatggtgagtatccaagaactatgcaaaatattgttgggaatagactcccaaagtttac |
30715 |
T |
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| Q |
311 |
taaggaggaagtgaaacttgtgaagggctcaattgattttgttggtatcaatcaatatactacttactacatgtatgatcctcataaccaaaaaccaaaa |
410 |
Q |
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| T |
30716 |
taaggaggaagtgaaacttgtgaagggctcaattgattttgttggtatcaatcaatatactacttactacatgtatgatcctcataaccaaaaaccaaaa |
30815 |
T |
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| Q |
411 |
gtccctggctatcaatcggattggaatgcagggtttgcttgtaagattttagtcattgttatt |
473 |
Q |
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| T |
30816 |
gtccctggctatcaatcggattggaatgcagggtttgcttgtaagattttagtcattgttatt |
30878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 207 - 457
Target Start/End: Original strand, 22694 - 22944
Alignment:
| Q |
207 |
tttaagttgtttataaatttccacaggttcattcatccccttgtttatggtgagtatccaagaactatgcaaaatattgttgggaatagactcccaaagt |
306 |
Q |
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| T |
22694 |
tttaaggtgtttataaatttccacaggttccttcatcccattgtttatggtgagtatccaagaactatgcaaactattgttgggaacaggcttccaaagt |
22793 |
T |
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| Q |
307 |
ttactaaggaggaagtgaaacttgtgaagggctcaattgattttgttggtatcaatcaatatactacttactacatgtatgatcctcataaccaaaaacc |
406 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| | |||| | |||||||||| | | |||||||| |
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| T |
22794 |
ttactaaggaggaagtgaatcttgtgaagggctccattgattttgttggtatcaatcaatatactacattctacgtatatgatcctcgtcaacaaaaacc |
22893 |
T |
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| Q |
407 |
aaaagtccctggctatcaatcggattggaatgcagggtttgcttgtaagat |
457 |
Q |
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| T |
22894 |
aaaagttcctggctatcaaaaggattggaatgcagagtttgcttgtaagat |
22944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 22062 - 22188
Alignment:
| Q |
13 |
caaaggggtaggattggaattttgttggattttgtttggtatgaacctcttacaagatcaaaggctgataactatgctgctcaaagagctagagactttc |
112 |
Q |
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|||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22062 |
caaaagggtagtattggaattttgttggatttagtttggtatgagtctcttacaagatcaaaggctgataactatgctgctcaaagagctagagattttc |
22161 |
T |
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| Q |
113 |
atattggatggtaaaaattgttggctt |
139 |
Q |
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| T |
22162 |
atattggatggtaaaaattgttggctt |
22188 |
T |
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