View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_12 (Length: 471)
Name: NF17743_low_12
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 5 - 384
Target Start/End: Complemental strand, 183248 - 182869
Alignment:
| Q |
5 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
104 |
Q |
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| T |
183248 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
183149 |
T |
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| Q |
105 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
204 |
Q |
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| T |
183148 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
183049 |
T |
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| Q |
205 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
304 |
Q |
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| T |
183048 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
182949 |
T |
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| Q |
305 |
atcaattaaatgatggtccattatatacctttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
384 |
Q |
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| T |
182948 |
atcaattaaataatggcccattatataactttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
182869 |
T |
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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
126 |
caaattagtctctataatacaatgatttatggactaatttatcc |
169 |
Q |
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| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
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