View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_13 (Length: 448)
Name: NF17743_low_13
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 433
Target Start/End: Original strand, 29946122 - 29946545
Alignment:
| Q |
11 |
atcatcatatccataccttctcaagaacatgggttcgggatagtgaactaagctggctgctttccatatttgcaagtaactgaacgacagtcttcagctg |
110 |
Q |
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| T |
29946122 |
atcatcatatccataccttctcaagaacatgggttcgggatagtgaactaagctggctactttccatatttgcaagtaactgaacgacagtcttcagctg |
29946221 |
T |
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| Q |
111 |
tggaacactacaaattcggaactcaaatcagcaatatataaaa-acatatcctacactgatacaaagttaaaagaaaataactgcagcgacttcgaatca |
209 |
Q |
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| T |
29946222 |
tggaacactacaaattttgaactcaaatcagcaatatataaaaaacatatcctacactgatacaaagttaaaagaaaataactgcagcgacttcgaatca |
29946321 |
T |
|
| Q |
210 |
atgttgtcaaaatagcggctatagcttaacataatttgaacaaaccacttttattatgcaacacgggattaataaaaagtgttgtcaaatagcagttaca |
309 |
Q |
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| T |
29946322 |
atgttgtcaaaatagcggctatagcttaacataatttgaacaaaccacttttattatgcaacacgggattaataaaaagtgttgccaaatagcagttaca |
29946421 |
T |
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| Q |
310 |
taggcaggcgctatagtgctattatgtaatatactaatttgaacaaatcgctgttttacgtaatcagtagccatcgatagaatatatattcaagatgaat |
409 |
Q |
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| T |
29946422 |
taggcaggcgctatagtgctattatgtaacatactaatttgaacaaatcgctgttttatgtaatcagtagccatcgatagaatatatattcaagatgaat |
29946521 |
T |
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| Q |
410 |
ataacagtttcagcacgaagttaa |
433 |
Q |
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| T |
29946522 |
ataacagtttcagcacgaagttaa |
29946545 |
T |
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