View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_15 (Length: 443)
Name: NF17743_low_15
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 19 - 421
Target Start/End: Original strand, 19451417 - 19451819
Alignment:
| Q |
19 |
ctcctgaataatcaggtaaataccctacagattctagtttctcctgaatttcattcatgaacttgtatatctctttactttgtggatgattggtatctcc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
19451417 |
ctcctgaataatcaggtaaataccctacagattctagtttctcctgaatttcattcatgaacttgtatatatctttactttgtggatgattggtgtctcc |
19451516 |
T |
|
| Q |
119 |
ggcaaaaaattcatgagcagcaccatttatctctattaaactacaaccaggctctttactcacacccttatcattcattagcttacgaagcaaccctaca |
218 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
19451517 |
ggcaaaaaattcatgagcagcaccgtttatctctattaaactacaaccaggctttttactcacacccttatcattcattagctttctaagcaaccctaca |
19451616 |
T |
|
| Q |
219 |
tcattccacctactagctgaagcatacactttcgacaaaagaacataagcaccaccacaaacactcccgtttgactcaaaaacttgctttgccatttctt |
318 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
19451617 |
tcattccatctactagctgaagcatacactttcgacaaaagaacataagcaccaccacaaacactcccgtttgactcaaaaatttgctttgccatttctt |
19451716 |
T |
|
| Q |
319 |
cacttagctcaatacttgcatgttgcttataacaagcatctaaaagactcctccaaattacagcatctggtttaatcggcatttctgaaatgacattcag |
418 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |
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| T |
19451717 |
cacttagctcaacacttgcatgttgcttataacaagcatctaaaagactcctccaaattacagcatctggtttaatcggcatttccgaaaccacattgag |
19451816 |
T |
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| Q |
419 |
agc |
421 |
Q |
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||| |
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| T |
19451817 |
agc |
19451819 |
T |
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