View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_16 (Length: 441)
Name: NF17743_low_16
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 43365565 - 43365965
Alignment:
| Q |
7 |
tccggagggatgttataaaccaatcggcatcaaatacttgagaaaactggctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatg |
106 |
Q |
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| T |
43365565 |
tccggagggatgttataaaccaatcggcatcaaataattgagaaaaattgctgcaagaaaataataatcaaatattacttacaaattaaggggtacaatg |
43365664 |
T |
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| Q |
107 |
aaaatgtgttctgctaccaaagaaaatattatatgtgatttaagagacattcttcctgatatgatagaagtaaattgaaaacacagacctgttgtctttc |
206 |
Q |
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| T |
43365665 |
aaaatgtgttctgctaccaaagaaaatattatatgtgatttaagagacattcttcctgatatgatagaagtaaattgtaaacacagacctgttgtctttc |
43365764 |
T |
|
| Q |
207 |
cagaaagatgtatgatccaacgctggaataacaagagtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtat |
306 |
Q |
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| T |
43365765 |
cagaaagatgtatgatccaatgctggaataacaagagtagcattcaaaagataggcagccacaacagcatcaattatctgcacccacaaacaatctgtat |
43365864 |
T |
|
| Q |
307 |
tttttcaataccagaaatattgcatccacataacattatttatcattcatatttgtatcaccaatcattcatcaaattcgattgagaaaatcctaattga |
406 |
Q |
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| T |
43365865 |
tttttcaataccagaaatattgcatccacataacattatttatcattcatatttgtatcaccaatcattcatcaaattcgattgagaaaatcctaattga |
43365964 |
T |
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| Q |
407 |
g |
407 |
Q |
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| T |
43365965 |
g |
43365965 |
T |
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