View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_17 (Length: 440)
Name: NF17743_low_17
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 22 - 428
Target Start/End: Complemental strand, 27742114 - 27741708
Alignment:
| Q |
22 |
ggacctaagctaatggccacactttcgcgattctttgattgctcatcatgaagaaaagtacaactatccccataaggacaaccttcctcagtataaaatt |
121 |
Q |
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| T |
27742114 |
ggacctaaactaatcgccacactttcacgattcttcgattgctcatcatgaagaaaagtacaactatccccataaggacaaccttcctcagtataaaatt |
27742015 |
T |
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| Q |
122 |
tcttacaatgtctccccttataagacctattattcatactctcccctacaaaagtactcgacccaaccgtcggtatctgaaactcctccctcggctgctc |
221 |
Q |
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| T |
27742014 |
tcttacaatgtctccccttataagacctattattcatactctcccctacaaaagtactcgacccaaccgtcggtatctgaaactcctccctcggctgctc |
27741915 |
T |
|
| Q |
222 |
aatcacactcctctcttcctcatgagcagccacaatctcctgccaattctccggcggccgacgaagctcctccacactatgagcaaaattacagttcgtt |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
27741914 |
aatcacactcctctcttcctcatgagcagccacaatctcctgccaattctccggcggccgacgaagctcctccacactatgagcaaaattacagtttgtt |
27741815 |
T |
|
| Q |
322 |
atataaggacatgtccccacacgaaacttacagcatagtttcgtcttaaaaaacattttcccaatcgctttcgcgcgattcgatcctcctccactaccac |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27741814 |
atataaggacatgtccccacacgaaacttacagcatagtttcgtcttaaaaaacattttcccaatcgctttcgcgcgattcgatcctcctccactaccac |
27741715 |
T |
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| Q |
422 |
caccacc |
428 |
Q |
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| T |
27741714 |
caccacc |
27741708 |
T |
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