View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_18 (Length: 437)
Name: NF17743_low_18
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 14 - 372
Target Start/End: Original strand, 2410780 - 2411125
Alignment:
| Q |
14 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
113 |
Q |
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| T |
2410780 |
catcatcaggacggcgtttatcaggtttggtgaggtcgacaaacttaggtgcttcgatcttctcgtagaaatcgtcgtcaatttctatttcctcttcttc |
2410879 |
T |
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| Q |
114 |
aattataggcaagaatcgattttctgacattattttgttaacaaaagaaaagtgttacagtaacacagtgttgtttttgttttggtgtttgtaacaacaa |
213 |
Q |
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| T |
2410880 |
aattataggcaagaatcgattttctgacattattttgttaaga--------gcgttacagtaacacagtgttgtttttgttttggtgtt-gtaacaacaa |
2410970 |
T |
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| Q |
214 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctggtagtaagagaataaaagaaacggtattcaagggttc |
313 |
Q |
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| T |
2410971 |
gtttagattgttcgaagaattttaaagtcccgtgtaactagccgttacgattcagacaggctg---gtaagagaataaaagaaacggtattcaagggttc |
2411067 |
T |
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| Q |
314 |
ttttcgtcatttcgaggttgaaattgggcttgaggttggtctcgacccgagaccaaatg |
372 |
Q |
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| T |
2411068 |
ttttcgtcatttcga-gttcaaattgggcttgaggttggactcgacccgagaccaaatg |
2411125 |
T |
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