View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17743_low_2 (Length: 709)

Name: NF17743_low_2
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17743_low_2
NF17743_low_2
[»] chr6 (4 HSPs)
chr6 (315-694)||(4387160-4387541)
chr6 (1-269)||(4386867-4387118)
chr6 (433-556)||(4375137-4375259)
chr6 (590-691)||(4375265-4375368)
[»] chr4 (2 HSPs)
chr4 (1-38)||(33090204-33090241)
chr4 (1-41)||(3786304-3786344)
[»] chr7 (1 HSPs)
chr7 (5-38)||(26639658-26639691)
[»] chr5 (1 HSPs)
chr5 (5-38)||(4160930-4160963)
[»] chr3 (1 HSPs)
chr3 (1-38)||(1683810-1683847)
[»] chr1 (2 HSPs)
chr1 (1-38)||(12318318-12318355)
chr1 (1-38)||(41136150-41136187)
[»] chr8 (1 HSPs)
chr8 (1-37)||(15691127-15691163)


Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 315 - 694
Target Start/End: Original strand, 4387160 - 4387541
Alignment:
Q  315 caactattttcataccatattttctacctcattttttacccattaaatgaagnnnnnnnnttatacaaatgtggatgcaggggaagaaatcaaggtggca 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||     
T  4387160 caactattttcataccatattttctacctcattttttacccattaaatgaa-aaaaaaaattatacaaatgtggatgcaggggaagaaatcaaggtggcg 4387258  T
Q  415 acatgannnnnnngccaaattgtagtttttgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagataa 514  Q
    ||||||       ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4387259 acatgatttttttgccaaattgtagtttatgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagatag 4387358  T
Q  515 aagaatttatactactagattctattacaacagtatttatact---agcatgaaactgtaaataacagcaagtccaatagagttatatcaagtgttgtcc 611  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4387359 aagaatttatactactagattctattacaacagtatttatactactagcatgaaactgtaaataacagcaagtccaatagagttatatcaagtgttgtcc 4387458  T
Q  612 tgataggaattcagtttcatcttagtaacaccattctcattgtttaccaagaaaactgtacagattaagaataaaatgctcta 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  4387459 tgataggaattcagtttcatcttagtaacaccattctcattgtttaccatgaaaactgtacagattaagaataaaatgctcta 4387541  T

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Target: chr6; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 4386867 - 4387118
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggacacaaatttacttaaaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4386867 tttcattgatgtgagatttggagttaccaaattcacaaaaaccctttattggatcatcactaaactataaacaagagacggaaacaaatttacttaaaca 4386966  T
Q  101 gagagaaacctatgggataagagaagcataagattaaacaagtgattagaggtttaaaccttatcatttatttatgatagccaaggtatgaaacaaacat 200  Q
    ||||||||||||||||||||||||||||||                 ||||||||| | ||| |||||||||||||||||||||||||||||||||||||    
T  4386967 gagagaaacctatgggataagagaagcata-----------------agaggtttacatcttttcatttatttatgatagccaaggtatgaaacaaacat 4387049  T
Q  201 atttgaaaggaaacaacaacaaattctccaacgaagtgttaatcactgctcaaggcatacatcaaacct 269  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4387050 atttgaaaggaaacaacaacaaattctccaacgaagtgttaatcaccgctcaaggcatacatcaaacct 4387118  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 433 - 556
Target Start/End: Original strand, 4375137 - 4375259
Alignment:
Q  433 attgtagtttttgccaaaatcatggtaatcctgccacaattccgtcaaactaaccaccaatccaaacatgcacgttagataaaagaatttatactactag 532  Q
    |||||||||||||||||||||| | | ||| ||||   ||||||||||||||||||||||||| ||||||||  ||||||| ||| ||||||||||||||    
T  4375137 attgtagtttttgccaaaatcacgatgatc-tgccgagattccgtcaaactaaccaccaatccgaacatgcatcttagatagaagtatttatactactag 4375235  T
Q  533 attctattacaacagtatttatac 556  Q
     |||||||||||||||| ||||||    
T  4375236 cttctattacaacagtaattatac 4375259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 590 - 691
Target Start/End: Original strand, 4375265 - 4375368
Alignment:
Q  590 agagttatatcaa--gtgttgtcctgataggaattcagtttcatcttagtaacaccattctcattgtttaccaagaaaactgtacagattaagaataaaa 687  Q
    |||||||||||||  ||| | ||||||||||||||||| |||||||||||||||  |||||||||||||| |  ||||| | |||||||| |||||||||    
T  4375265 agagttatatcaaaagtggtatcctgataggaattcagcttcatcttagtaacattattctcattgtttatcttgaaaattatacagattcagaataaaa 4375364  T
Q  688 tgct 691  Q
    ||||    
T  4375365 tgct 4375368  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 33090204 - 33090241
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaa 38  Q
    |||||||||||||||||||||||||||| |||||||||    
T  33090204 tttcattgatgtgagatttggagttaccgaattcacaa 33090241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3786304 - 3786344
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaaaaa 41  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  3786304 tttcattgatgtgagatatggagttaccgaattcacaaaaa 3786344  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 26639658 - 26639691
Alignment:
Q  5 attgatgtgagatttggagttaccaaattcacaa 38  Q
    |||||||||||||||||||||||| |||||||||    
T  26639658 attgatgtgagatttggagttaccgaattcacaa 26639691  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 4160930 - 4160963
Alignment:
Q  5 attgatgtgagatttggagttaccaaattcacaa 38  Q
    ||||||||||||||||||||||||||||| ||||    
T  4160930 attgatgtgagatttggagttaccaaatttacaa 4160963  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1683810 - 1683847
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaa 38  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  1683810 tttcattgatgtgagatttagagttaccgaattcacaa 1683847  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12318355 - 12318318
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaa 38  Q
    ||||||||||||||||||||||| |||| |||||||||    
T  12318355 tttcattgatgtgagatttggagctaccgaattcacaa 12318318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41136150 - 41136187
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcacaa 38  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  41136150 tttcattgatgtgagatttggagttaccgaatttacaa 41136187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15691127 - 15691163
Alignment:
Q  1 tttcattgatgtgagatttggagttaccaaattcaca 37  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  15691127 tttcattgatgtgaggtttggagttaccgaattcaca 15691163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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