View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_21 (Length: 425)
Name: NF17743_low_21
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 11815994 - 11815814
Alignment:
| Q |
17 |
acaaacaaaagtacttgt--atattagtgttttattttcatatgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtagg |
114 |
Q |
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| T |
11815994 |
acaaacaaaagtacttgtgtatattagtgtttt-ttttcatatgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtagg |
11815896 |
T |
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| Q |
115 |
cactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttccttaataattacaagtgagctctcg |
196 |
Q |
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| T |
11815895 |
cactgtcctgggagtgacttggctaaaattgaaatatccatttttctacattatttccttaataattacaagtgagctctcg |
11815814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 11800101 - 11799983
Alignment:
| Q |
56 |
atgtgcagaatcacaatgctaaagttggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccat |
155 |
Q |
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| T |
11800101 |
atgttcaggatcacaaagcaaaagttggaacctttattccttttggagcaggaagtatgcattgtcctgcgagtgacttggcaaaacctgaaatttttgt |
11800002 |
T |
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| Q |
156 |
atttctacattatttcctt |
174 |
Q |
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| T |
11800001 |
atttctacattatttcctt |
11799983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 290 - 356
Target Start/End: Complemental strand, 11815347 - 11815285
Alignment:
| Q |
290 |
ttaacttttgctgttaaattaatttcatagaaaagaattaattagtttgaaatcaagctcaattttt |
356 |
Q |
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| T |
11815347 |
ttaatttttgctgttaaattaatttcatagaaagg----aattagtttgaaatcaagctcaattttt |
11815285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 416
Target Start/End: Complemental strand, 11815288 - 11815247
Alignment:
| Q |
375 |
ttttgtacaggcttgagatagtgaatccaaaatgtcctatga |
416 |
Q |
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| T |
11815288 |
ttttgtacaggcttgagatagtgaatccagaatgtcctatga |
11815247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 82 - 173
Target Start/End: Original strand, 37436034 - 37436125
Alignment:
| Q |
82 |
ggaacattccttccttttggagcaggaagtaggcactgtcctggaagtgacttggctaaaattgaaatatccatatttctacattatttcct |
173 |
Q |
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| T |
37436034 |
ggaacctttcttccttttggagcaggaagtaggctctgtcctggagccgacttagcaaaacttgaaatttctatatttcttcattatttcct |
37436125 |
T |
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