View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_24 (Length: 366)
Name: NF17743_low_24
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 64 - 347
Target Start/End: Complemental strand, 5495546 - 5495263
Alignment:
| Q |
64 |
tagagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatatt |
163 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||| ||||| | |||||||||||||| | |||||||||||||||||||||||||| |
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| T |
5495546 |
tagagatatcaagataatgcaagtttgacaaattgccaagatgaggggggaccattccagaaaaatatgaatctgataagtcaaggtaattgagcatatt |
5495447 |
T |
|
| Q |
164 |
gagggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatc |
263 |
Q |
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|||||||||||||||||||||||||| || | ||||||| | ||| || || |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5495446 |
gagggaaccaataaattctggaatgggaactccttcgaaatcattatatcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatc |
5495347 |
T |
|
| Q |
264 |
ttaccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatga |
347 |
Q |
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||||| || |||||||| ||||||||| ||||| |||||||| |||||||||||||| || ||||| || ||||| ||||||| |
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| T |
5495346 |
ttaccaccaaagggagacagtgaaaatatacttacagttttgatgcagataagatagggcctgagcttaagctttaaaacatga |
5495263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 5489831 - 5489481
Alignment:
| Q |
3 |
agatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaatttgacaaat |
96 |
Q |
| |
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|||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| || |||||||| |||| |
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| T |
5489831 |
agatatcgaagcgaagacagagcagatagccagcttaagtctctagcccaaagtgacgaatatgggctagagatatcaagatagtgtaaatttgataaat |
5489732 |
T |
|
| Q |
97 |
tgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttc |
196 |
Q |
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| T |
5489731 |
tgccaagattagtcgggaccattccagtgaaatttgcattggacaagtcaaggtaattgagcatattgagataaccaataaattctggaatgggagctcc |
5489632 |
T |
|
| Q |
197 |
ttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatcttaccgccgaagggagagagtgaaaatgtactt |
296 |
Q |
| |
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||| |||| | | || || |||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| || ||| | | || | |
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| T |
5489631 |
ttcaaagtcactatagcttaggtccaagtgactcaagtgtttcaagtcagccaatgaaggatttatcttaccaccaaaggaaggcgatgacagtatatta |
5489532 |
T |
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| Q |
297 |
gcagttttgttgcagataagatagcgctggagctcaaactttagaacatga |
347 |
Q |
| |
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||||||| ||||||||||||| ||| |||||||||||||| |||||||| |
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| T |
5489531 |
atagttttggtgcagataagataacgccggagctcaaacttttgaacatga |
5489481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 5476706 - 5476360
Alignment:
| Q |
3 |
agatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtga------tggactagagatatcaagataatgcaaatttgacaaat |
96 |
Q |
| |
|
||||||||||| |||||||||| ||| ||||||||||||||||| |||||| ||| || ||||||||||||||||| |||||||||||||||| |
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| T |
5476706 |
agatattgaagtgaagacagagcagaaagccagcttaagtctctgacccaaactgaagaatctgaactagagatatcaagatggtgcaaatttgacaaat |
5476607 |
T |
|
| Q |
97 |
tgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttc |
196 |
Q |
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| ||||||| | | ||||| | ||| | ||| | || | | ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| | |
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| T |
5476606 |
taccaagatcagtagggaccattcctgtaaattttgaattagataagtcaagataattcagcatattgagagaaccaataaattctggaatggaaattcc |
5476507 |
T |
|
| Q |
197 |
ttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggattt-atctt-accgccgaagggagagagtgaaaatgtac |
294 |
Q |
| |
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|| |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| || || |||||| | | ||||||||| ||| |
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| T |
5476506 |
tttgaagttattgtaactcaggtccaagtgactcaagtgtttcaagtaagccaatgaaggatttaatattcaccgcc------aaaaagtgaaaatatac |
5476413 |
T |
|
| Q |
295 |
ttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatga |
347 |
Q |
| |
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|| |||||||||||||||||| |||| | ||||||||||||||||| |||| |
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| T |
5476412 |
ttacagttttgttgcagataacataggtattgagctcaaactttagaatatga |
5476360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 65 - 347
Target Start/End: Complemental strand, 5484578 - 5484296
Alignment:
| Q |
65 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
164 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||| ||||| | ||||| ||||| |||| | |||| |||||||||||| | ||| ||| |
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| T |
5484578 |
agagatatcaaggtagcgcaaatttgacaaattgccaagatgattagggacaattccagtaaaatttgcatttgataggtcaaggtaattcaacattttg |
5484479 |
T |
|
| Q |
165 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
264 |
Q |
| |
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|| ||||||||| ||||||||||| |||| ||||||| | |||| | || | |||||||||||||||| || ||||||| || |||||||||||||||| |
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| T |
5484478 |
agagaaccaatatgttctggaatgggaattccttcgaaatcattgaagcttaagtccaagtgactcaagtgtgtcaagtcggcgaatgaaggatttatct |
5484379 |
T |
|
| Q |
265 |
taccgccgaagggagagagtgaaaatgtacttgcagttttgttgcagataagatagcgctggagctcaaactttagaacatga |
347 |
Q |
| |
|
||| ||||||| || |||| | | || ||| ||| || |||||||||||||| ||| |||||||||||||||||||||| |
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| T |
5484378 |
caccaccgaaggctgactgtgacagtatagttgtggttctggtgcagataagatagggcttgagctcaaactttagaacatga |
5484296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 3 - 269
Target Start/End: Complemental strand, 5481782 - 5481510
Alignment:
| Q |
3 |
agatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtgatggac------tagagatatcaagataatgcaaatttgacaaat |
96 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||| ||||||||||| |||||||||| | | |||||||||||||||||||||||||||||| || |
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|
| T |
5481782 |
agatattgaagcgaagacagagtagagagccaacttaagtctctgacccaaagtgacgaaaatgagttagagatatcaagataatgcaaatttgacagat |
5481683 |
T |
|
| Q |
97 |
tgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattgagggaaccaataaattctggaatggaaatttc |
196 |
Q |
| |
|
||||||||||| |||| | ||| | ||||| |||| | ||||||||||||||||||||||||||||| |||||||||||||||||||||| || | | |
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|
| T |
5481682 |
tgccaagatgaggaaggaccattcctgtaaaatttgcattagataagtcaaggtaattgagcatattgagagaaccaataaattctggaatgggaactcc |
5481583 |
T |
|
| Q |
197 |
ttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatcttaccg |
269 |
Q |
| |
|
|| ||| | ||| | || ||||||||||||||||| |||| |||| | | ||||||||||||||||||||| |
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|
| T |
5481582 |
tttgaaatcattaaagcttaggtccaagtgactcaaatgttttaagttaactaatgaaggatttatcttaccg |
5481510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 65 - 280
Target Start/End: Complemental strand, 5466970 - 5466755
Alignment:
| Q |
65 |
agagatatcaagataatgcaaatttgacaaattgccaagatgatttgggactactccagaaaaatatgcactggataagtcaaggtaattgagcatattg |
164 |
Q |
| |
|
||||| |||||||| |||||||||||||||||| || |||||| ||||| | ||||||||||| |||| |||||| ||||||||||||||| ||||| |
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|
| T |
5466970 |
agagacatcaagatgatgcaaatttgacaaatttccgagatgaggagggaccattccagaaaaatttgcatgggataaatcaaggtaattgagcgtattg |
5466871 |
T |
|
| Q |
165 |
agggaaccaataaattctggaatggaaatttcttcgaagttattgtaactcaggtccaagtgactcaagcgtttcaagtcagccaatgaaggatttatct |
264 |
Q |
| |
|
|| |||||||||||||| ||||||| || | ||| ||| | ||| || |||| ||||||||||||||| |||| |||||| |||||||||||||||| |
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|
| T |
5466870 |
agagaaccaataaattcaggaatgggaactcctttgaaatcattatagctcaagtccaagtgactcaaatgttttaagtcaagtaatgaaggatttatct |
5466771 |
T |
|
| Q |
265 |
taccgccgaagggaga |
280 |
Q |
| |
|
|||| || |||||||| |
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|
| T |
5466770 |
tacctcccaagggaga |
5466755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 5500648 - 5500566
Alignment:
| Q |
3 |
agatattgaagcgaagacagagaagatagccagcttaagtctctagcccaaagtgatggactagagatatcaagataatgcaa |
85 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5500648 |
agatattgaagcgaagtcagagcagatagccagcttaagtctctagtccaaagtgatggactagagatatcaagataatgcaa |
5500566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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