View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_25 (Length: 364)
Name: NF17743_low_25
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_25 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 37956954 - 37957317
Alignment:
| Q |
1 |
ttgggaactattagagataaaacaagaaaaaagtggttccattacggtaagtaattnnnnnnnnnnnntatataccttattcttacttaaaacgttatta |
100 |
Q |
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| T |
37956954 |
ttgggaattattacagataaaacaagaaaaaagttgttccattacggtaagtaattgagagagata--tatataccttattcttacttaaaacgttatta |
37957051 |
T |
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| Q |
101 |
acatcttcagctttccataatcgactgcgttttcctggatcatcttcgcattgaagccgaacaatttcatgtcccatgtcttgtattagatcatgcatcc |
200 |
Q |
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| T |
37957052 |
acatcgtcagctttccataatcgactgcgttttcctggatcatcttcgcattgaagccgaacaatttcatgtcccatgtcttgtattagatcatgcatcc |
37957151 |
T |
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| Q |
201 |
aaattctgccatttgaaatagatataaggcacc--tgtcttgaagaatttcaattccaatgcgagtagagaaaccacaataatccaatgtttgaactaca |
298 |
Q |
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| T |
37957152 |
aaattctgccatttgaaatagatataaggcacctgtgtcttgaagaatctcaattccaatgcgagtagagaaaccacaataatccaatgtttgaactaca |
37957251 |
T |
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| Q |
299 |
cggttctcaagttctcctccataaaagcaagctatgtcaagaaatatatccttttgctcgttgtca |
364 |
Q |
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| T |
37957252 |
cggttctcaagttctcctctataaaagcaagctatgtcaagaaatatatccttttgctcgttgtca |
37957317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 159 - 354
Target Start/End: Complemental strand, 37930471 - 37930276
Alignment:
| Q |
159 |
gaacaatttcatgtcccatgtcttgtattagatcatgcatccaaattctgccatttgaaatagatataaggcacctgtcttgaagaatttcaattccaat |
258 |
Q |
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| T |
37930471 |
gaacaatttcatgtcccatttcctgtattagatcatgcatcacaattctaccttctaaaatagatataagacacctctctttgagaatgtccattccaat |
37930372 |
T |
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| Q |
259 |
gcgagtagagaaaccacaataatccaatgtttgaactacacggttctcaagttctcctccataaaagcaagctatgtcaagaaatatatccttttg |
354 |
Q |
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| T |
37930371 |
gtgagcagagaaaccacaagaatccaatgtttgtgctacaacattctccaagtgtcctctatagaaacaagctatgtcaacaaatatatccttttg |
37930276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 357
Target Start/End: Complemental strand, 19869563 - 19869529
Alignment:
| Q |
323 |
aagcaagctatgtcaagaaatatatccttttgctc |
357 |
Q |
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| T |
19869563 |
aagcaagctatgtcaagaaatatatccttctgctc |
19869529 |
T |
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