View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_27 (Length: 350)
Name: NF17743_low_27
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 7657393 - 7657055
Alignment:
| Q |
1 |
tgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcgtgtccttgaattg--gcaccttcagatctccaaatcccttaat |
98 |
Q |
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| T |
7657393 |
tgaacttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcatgtccttgaattgaggcaccttcagatctccaaatcctttaat |
7657294 |
T |
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| Q |
99 |
atgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgaggattttgtccttgttggccaccaccctttggctgattttggttattt |
198 |
Q |
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| T |
7657293 |
atgttgaagttgttgcagctgttgtaactgttgctgaagctgctgttgttgaggattttgtccttgttggctaccaccctttggctgattttggttattt |
7657194 |
T |
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| Q |
199 |
ccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgt |
298 |
Q |
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| T |
7657193 |
ccaggacccttttgccccttgttgttattgtttcctccaccaccttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgt |
7657094 |
T |
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| Q |
299 |
tattgttgttgtttgcctttggagcaccccaaagttctg |
337 |
Q |
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| T |
7657093 |
tattgttgttgtttgcctttggagcaccccaaagttctg |
7657055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 140 - 337
Target Start/End: Complemental strand, 7651875 - 7651678
Alignment:
| Q |
140 |
gctgttgttgaggattttgtccttgttggccaccaccctttggctgattttggttatttccaggacccttttgccccttgttgttattgtttcctccacc |
239 |
Q |
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| T |
7651875 |
gctgttgttgaggattctgctcttgttgtccacctccctttggttggttttggttatttataggatccttttgcccattgttgttattgttttctccacc |
7651776 |
T |
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| Q |
240 |
accttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgttattgttgttgtttgcctttggagcaccccaaagttctg |
337 |
Q |
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| T |
7651775 |
accttttccagtgtcaatttgaatgttcttcatctggtttgccatgttgttatggttgttattgttgttgttctccgttggagcacaccaaagttctg |
7651678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 5 - 123
Target Start/End: Complemental strand, 7651988 - 7651868
Alignment:
| Q |
5 |
cttaacacctttcatatttgtattttgatttggtggtggcattttcatgttcgtgtccttgaatt--ggcaccttcagatctccaaatcccttaatatgt |
102 |
Q |
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| T |
7651988 |
cttaacacctttcatatttggattttgatttggtggtggcatcatcatgttcatgtccttgaattgagtccccttaagatcttcaagtcctttcatctgc |
7651889 |
T |
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| Q |
103 |
tgaagttgttgcagctgttgt |
123 |
Q |
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| T |
7651888 |
tgaagttgttgaagctgttgt |
7651868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 48539207 - 48539284
Alignment:
| Q |
234 |
tccaccaccttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgttattgttgttgtt |
311 |
Q |
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| T |
48539207 |
tccaccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctgattattattgttgttgtt |
48539284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 48573462 - 48573539
Alignment:
| Q |
234 |
tccaccaccttttccattgtcaatatgcatgttcttcatttgatttggaatgttgttctggttgttattgttgttgtt |
311 |
Q |
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| T |
48573462 |
tccaccacctttgccattatcaatttgcatgttctttaactgattaacaaggttgttctgattattattgttgttgtt |
48573539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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