View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_28 (Length: 315)
Name: NF17743_low_28
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 29811123 - 29810817
Alignment:
| Q |
1 |
atcattaatataatggaaa-gtatgaaacaaccaaccatatattgcccattctcttgcgaataccgcattcttgcta--aagccacttgtgaaagcatat |
97 |
Q |
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||||||||||||||||||| |||||||||||||| |||| |||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
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| T |
29811123 |
atcattaatataatggaaaagtatgaaacaaccagccatgtattgcccattctcttacgaataccgcattcttgctataaagccacttgtgaa-gcataa |
29811025 |
T |
|
| Q |
98 |
atgctcttatttttgtggaaggacttccacgttcctcgttcatcactagtcatcatcatttactatacgactacaaatcttcaatgcacatattgaaggc |
197 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29811024 |
atgctcttatttttgtggaaggacttccatgttcctcgttcatcactagtcatcatcatttactatacgactacaaatcttcaatgcacatattgaaggc |
29810925 |
T |
|
| Q |
198 |
aatcccgatttttcacgagc-----atgcaacacactgagattaatttccatgtggttcgtgacgaaatatacaacaagacgtacattatacatcttcaa |
292 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29810924 |
aatcccgatttttcatgagcatgcaatgcaacacactgagattaatttccatgtggttcgtgacgaa--atacaacaagacgtacattatacatcttcaa |
29810827 |
T |
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| Q |
293 |
tggtatttgt |
302 |
Q |
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|||||||||| |
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| T |
29810826 |
tggtatttgt |
29810817 |
T |
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