View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17743_low_3 (Length: 683)

Name: NF17743_low_3
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17743_low_3
NF17743_low_3
[»] chr7 (3 HSPs)
chr7 (15-665)||(28592471-28593122)
chr7 (17-64)||(22851390-22851437)
chr7 (22-78)||(44895241-44895297)
[»] chr3 (3 HSPs)
chr3 (17-78)||(15086003-15086064)
chr3 (17-74)||(15267089-15267146)
chr3 (15-78)||(49321967-49322030)
[»] chr5 (2 HSPs)
chr5 (17-76)||(702909-702968)
chr5 (27-78)||(28096150-28096201)
[»] chr4 (1 HSPs)
chr4 (15-78)||(20135537-20135599)
[»] chr1 (1 HSPs)
chr1 (15-78)||(15741402-15741465)
[»] chr2 (2 HSPs)
chr2 (19-60)||(37740758-37740799)
chr2 (19-70)||(42963287-42963338)
[»] scaffold0758 (1 HSPs)
scaffold0758 (36-78)||(4850-4892)
[»] chr6 (2 HSPs)
chr6 (17-78)||(2576154-2576215)
chr6 (40-78)||(26590268-26590306)


Alignment Details
Target: chr7 (Bit Score: 564; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 15 - 665
Target Start/End: Original strand, 28592471 - 28593122
Alignment:
Q  15 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatctatcactattcgaagactattatatt 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592471 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatctacaaccaatctatcactattcgaagactattatatt 28592570  T
Q  115 cctttaaagacaannnnnnn-gttagc-tcatatcggtacgaagtttctaccgtcgtttaatattgaatctccgttgaggaacttgtagggcacataagg 212  Q
    |||||||||||||        |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  28592571 cctttaaagacaattttttttgttagcatcatatcggtacgaagtttctaccgtcgtttaatattgaatctccgttggggaacttgcagggcacataagg 28592670  T
Q  213 tgggttctcccctatcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgagaggataaatagaaaagttgttgtagagcaaa 312  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  28592671 tgggttctcccctctcatacacttgaaaaatataattaatatcacttaaaaattaaattgacaattgagag-ataaatagaaaagttgttgtagagcaaa 28592769  T
Q  313 agggggaagtaatttaagaataacatttaaactagacataagaaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattc 412  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28592770 agggggaagtaatttaagaataacatttaaactagaaataagaaatgtaaaaacaatcaaccaatgacaaacaaaataaattcacagtctcatcacattc 28592869  T
Q  413 aacaaactagattcaattcatacaaactagtaatacaaaccagagaaacaactttgttcttccattccttcaaaaaactttgttcttgcctgttttctgc 512  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28592870 aacaaactagattcaattcatacaaactagtaatacaaactagagaaacaaatttgttcttgcattccttcaaaaaactttgttcttgcctgttttctgc 28592969  T
Q  513 tagtataatgggtcacccagagtcaatacccgaaccaccaccctttcctttgtgttaaagatccgaacccaaccaagtcttggatactcaccaccaatca 612  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  28592970 tagtataatgggtcaacccgagtcaatacccgaaccaccaccctttcctttgtgttaaagatccgaacccaaccaagtcttggatactcaccaccattca 28593069  T
Q  613 aggagttttttaacgcgtggttcgttcttgactccacacccctcgtgtccttc 665  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28593070 aggagttttttaacgcgtggttcgttcttgactccacacccctcgagtccttc 28593122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 22851390 - 22851437
Alignment:
Q  17 tatcattgtcattgatggaattgtcatcattcaaattttcattagatt 64  Q
    |||||||||||||||||| || |||||| || ||||||||||||||||    
T  22851390 tatcattgtcattgatgggatcgtcatcttttaaattttcattagatt 22851437  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 44895297 - 44895241
Alignment:
Q  22 ttgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    ||||||||||||  ||| |||||||||||| |||||||| ||| ||||||| |||||    
T  44895297 ttgtcattgatgagattatcatcattcaaaatttcattatattgttcaagagtatct 44895241  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15086003 - 15086064
Alignment:
Q  17 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||    
T  15086003 tatcattgtcattgatgggattgtcatcattcaaattttcattagattgttcaagattatct 15086064  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 17 - 74
Target Start/End: Original strand, 15267089 - 15267146
Alignment:
Q  17 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagatt 74  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||| |||||||||    
T  15267089 tatcattgtcattgatgagattgtcatcattcaaattttcattagattgttcaagatt 15267146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 49322030 - 49321967
Alignment:
Q  15 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    |||||||| ||||| ||||  ||||||||||||||||||||||||||| | |||||| ||||||    
T  49322030 aatatcatggtcatcgatgagattgtcatcattcaaattttcattagaatgttcaaggttatct 49321967  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 702968 - 702909
Alignment:
Q  17 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattat 76  Q
    |||||||||||||||||  ||||||||||||| ||||||||||||||| |||||||||||    
T  702968 tatcattgtcattgatgagattgtcatcattcgaattttcattagattgttcaagattat 702909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 28096201 - 28096150
Alignment:
Q  27 attgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    |||||||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  28096201 attgatgggattgtcatcattccaattttcattagattgttcaagattatct 28096150  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 20135599 - 20135537
Alignment:
Q  15 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    |||||||| |||||| ||| ||||||||||||||||||||| |||||||| |||||||||||||    
T  20135599 aatatcatggtcattaatgaaattgtcatcattcaaatttt-attagattcttcaagattatct 20135537  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 15741465 - 15741402
Alignment:
Q  15 aatatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    ||||||||  ||||| |||  ||||||||||||||||||||||||||||| |||||||||||||    
T  15741465 aatatcatgatcattaatgagattgtcatcattcaaattttcattagattgttcaagattatct 15741402  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37740758 - 37740799
Alignment:
Q  19 tcattgtcattgatggaattgtcatcattcaaattttcatta 60  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  37740758 tcattgtcattgatgggattgtcatcattcaaattttcatta 37740799  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 42963287 - 42963338
Alignment:
Q  19 tcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaa 70  Q
    |||||||||||||||| ||||| | |||||||||||| |||||||| |||||    
T  42963287 tcattgtcattgatgggattgtaaacattcaaatttttattagattgttcaa 42963338  T

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Target: scaffold0758 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 4892 - 4850
Alignment:
Q  36 attgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  4892 attgtcatcatttaaattttcattagattgttcaagattatct 4850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 2576154 - 2576215
Alignment:
Q  17 tatcattgtcattgatggaattgtcatcattcaaattttcattagatttttcaagattatct 78  Q
    ||||||| ||||||||   |||| |||||||| ||||||||||||||| |||||||||||||    
T  2576154 tatcattttcattgatatgattgccatcattccaattttcattagattgttcaagattatct 2576215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 26590306 - 26590268
Alignment:
Q  40 tcatcattcaaattttcattagatttttcaagattatct 78  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  26590306 tcatcattccaattttcattagattgttcaagattatct 26590268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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