View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_34 (Length: 288)
Name: NF17743_low_34
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 46499901 - 46500166
Alignment:
| Q |
10 |
acatgaagttggcctatac----tattttcaattcaagattttaatatgtatgtttcatcagttttaagttannnnnnncacaactaaatttaggg-ttc |
104 |
Q |
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| T |
46499901 |
acatgaagttggcctatacatactattttcaattcaagattttaatatgtatgtttcatcagttttaagttatttttttcacaattaaatttaggggttc |
46500000 |
T |
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| Q |
105 |
atatctatgagcctctagaaaatgatccaaatgtgaattcataccatttccaataacaaagatatattttataataataaaaaatggataacacatatga |
204 |
Q |
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| T |
46500001 |
at--ctatgagcctctaaaaaatgatccaaatgtgaatttttaccatttccaataacaaagatatattttataataataaaaaatggataacacatataa |
46500098 |
T |
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| Q |
205 |
gagttcattaaaatttatcatctttagactgatctagtgtggtttcatgactggccagtcctcatagc |
272 |
Q |
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| T |
46500099 |
gagttcattaaaatttatcatctttagactgatctagtgtggtttcatgaccggccagtcctcatagc |
46500166 |
T |
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