View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_36 (Length: 270)
Name: NF17743_low_36
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_36 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 10 - 255
Target Start/End: Original strand, 42941766 - 42942008
Alignment:
| Q |
10 |
tcatcacatatcatttcccagcaaactctccaactgctgaggtaaaataatagcaagcagcattaggcattggctaccttaattgatcctattcatttta |
109 |
Q |
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| T |
42941766 |
tcatcacatatcatttcccagcaaactctccaactgctgaggtaaagta---gcaagcagcattaggcactggctaccttaattgatcctattcatttta |
42941862 |
T |
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| Q |
110 |
ggttgattttaggtcaacttattattaacaacaatgacattaatcgtcatgtcatttacagctgctacatatgagttttgaatttcatctggttacaaaa |
209 |
Q |
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| T |
42941863 |
agttgattttaggtcaacttattattaacaacaatgacattaatcgtcatgtcatttacaactgctacatatgagttttgaatttcatccggttacaaaa |
42941962 |
T |
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| Q |
210 |
tcaaactcttaacaattgaattgacatctagatgacataaccaact |
255 |
Q |
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| T |
42941963 |
tcaaactcttaacaattgaattgacatctcgatgacataaccaact |
42942008 |
T |
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