View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_39 (Length: 258)
Name: NF17743_low_39
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 9247739 - 9247831
Alignment:
| Q |
150 |
cctcgtgatcaatcaaggacaatctgtcattgcagccacacatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaa |
242 |
Q |
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| T |
9247739 |
cctcatgatcaatcaaggacaatctgtcattgcagccacgcatctgacaaactaattttgtttcttcttatgttgcaaaatgcatgtaatgaa |
9247831 |
T |
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Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 82
Target Start/End: Original strand, 9247600 - 9247671
Alignment:
| Q |
11 |
atcatcataagaacactgcattgactttgcagaaactccaaacaccttcacactgcatcatttaaagacggt |
82 |
Q |
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| T |
9247600 |
atcatcataagaacactgcattgactttgcagaaactccaaataccttcacactgcatcatttaaagacggt |
9247671 |
T |
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