View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_40 (Length: 258)
Name: NF17743_low_40
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_40 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 31860703 - 31860936
Alignment:
| Q |
9 |
acatcatcaccctccaaaggaaatattaaatacatcttaaaacattctaagacaagagtataagacaaggnnnnnnnnnnnnnnnggttaaatgcaagag |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
31860703 |
acatcaacaccctccaaaggaaatattaaatacatcttaaaacattctaagacaagagtataagacaaggaaaaaaaaaaaaaaagtttaaatgcaagag |
31860802 |
T |
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| Q |
109 |
tgttttcaaccagtacattttgcaagcaaaaactataactcatatatagtttggtctcccctttctttacaattaattctaaacaatgtgagannnnnnn |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31860803 |
tgttttcaaccagtacattttgcaagcaaaaactataactcatatatagtttggtctcccctttctttacaattaattctaaacaatgtgagattttttt |
31860902 |
T |
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| Q |
209 |
caacatgtatattttcaaacaacacatataactt |
242 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
31860903 |
caacatgtatattttcaatcaacacatataactt |
31860936 |
T |
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