View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_43 (Length: 246)
Name: NF17743_low_43
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_43 |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 194
Target Start/End: Original strand, 38448904 - 38449079
Alignment:
| Q |
19 |
tttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatctgctactaaaaggttgaacttgataggacctttggtgcagcat |
118 |
Q |
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| T |
38448904 |
tttcagaacttctctcaaaacaatgagagattcttctctgaagttagggacagtatctgctactaaaaggttgaacttgataggacctttggtgcagcat |
38449003 |
T |
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| Q |
119 |
tgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattgatgaatcgagatgttgaggaagcatg |
194 |
Q |
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| T |
38449004 |
tgttgcaatatcaagttgctcctattgctgaagttatattagaaaaatggatgaatcgagatgttgaggaagcatg |
38449079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 194
Target Start/End: Original strand, 38440567 - 38440691
Alignment:
| Q |
71 |
gtatctgctactaaaaggttgaacttgataggacct-ttggtgcagcattgttgcaatatcaagttgctcctattgctgaagttatattagaaaaattga |
169 |
Q |
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| T |
38440567 |
gtatctgctgctacaaggttgaacttgataggaccccttggtgcagcattgttgcaacatcaagttgctcctattgctgaagttatattagaaaaatgga |
38440666 |
T |
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| Q |
170 |
tgaatcgagatgttgaggaagcatg |
194 |
Q |
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| T |
38440667 |
tgaatcgtgatgttgaggaagcatg |
38440691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 38440418 - 38440467
Alignment:
| Q |
27 |
cttctctcaaaacaatgagagattcttctctgaagttagggacagtatct |
76 |
Q |
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| T |
38440418 |
cttctctcaaaacaatgagagattcttctatgaagttagggactgtatct |
38440467 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 38449112 - 38449148
Alignment:
| Q |
201 |
ttgccatggttacttgttttcaagactgttttcatct |
237 |
Q |
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| T |
38449112 |
ttgccatggttacttgttttcaagactgttttcatct |
38449148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 38440729 - 38440761
Alignment:
| Q |
205 |
catggttacttgttttcaagactgttttcatct |
237 |
Q |
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| T |
38440729 |
catggttacttgttttcaagattgttttcatct |
38440761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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