View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17743_low_45 (Length: 242)
Name: NF17743_low_45
Description: NF17743
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17743_low_45 |
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| [»] scaffold0472 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 17339295 - 17339108
Alignment:
| Q |
18 |
acctctctctttcaacttccaatttcttattctttgttccaaaatcaagtaaaaccacaagcttcatcagtaacaccaccagctcacaatccaaatcaga |
117 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17339295 |
acctctctctttcaaatttcaatttcttattctttgttccaaaatcaagtaaaaccacaagcttcatcagtaacaccaccagctcacaatccaaatcaga |
17339196 |
T |
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| Q |
118 |
tcataaagcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgctcccacaaccgtcacttctctttacaacatcactcc |
205 |
Q |
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| T |
17339195 |
tcataaggcgcacaatcatcaaaggatgcatcacaccagtcaaatgcgtcgctcccacaaccgtcactcctctttacaacatcactcc |
17339108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 17338703 - 17338670
Alignment:
| Q |
209 |
tttaattgaaccaggagggttagaaaccacactt |
242 |
Q |
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| T |
17338703 |
tttaattgaaccaggagggttagaaaccacactt |
17338670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 6398226 - 6398172
Alignment:
| Q |
18 |
acctctctctttcaacttccaatttcttattcttt-gttccaaaatcaagtaaaa |
71 |
Q |
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| T |
6398226 |
acctctctctttcaaattccaattatgtattctttcgttccaaaatcaagtaaaa |
6398172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 6702615 - 6702422
Alignment:
| Q |
18 |
acctctctctttcaacttccaatttcttattctttgttccaaaatcaagtaaaaccacaagcttcatcagtaacaccaccagctcacaatccaaatcaga |
117 |
Q |
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||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6702615 |
acctctctctttcaaatttcaatttcttattctatgttccaaaatcaagtaaaaccacaagcttcatcagtaacaccaccagctcacaatccaaatcaga |
6702516 |
T |
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| Q |
118 |
tcataaagcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgctcccacaaccgtcacttctctttacaacatcactcccgtttt |
211 |
Q |
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| T |
6702515 |
tcataaggcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgctcccacaactgtcactcctctttacaacatcacttccgtttt |
6702422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 209 - 242
Target Start/End: Complemental strand, 6702014 - 6701981
Alignment:
| Q |
209 |
tttaattgaaccaggagggttagaaaccacactt |
242 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
6702014 |
tttaattgaaccaggagggttagaaaccacactt |
6701981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 154; Significance: 8e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 18 - 211
Target Start/End: Complemental strand, 54866375 - 54866183
Alignment:
| Q |
18 |
acctctctctttcaacttccaatttcttattctttgttccaaaatcaagtaaaaccacaagcttcatcagtaacaccaccagctcacaatccaaatcaga |
117 |
Q |
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||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54866375 |
acctctctctttcaaatttcaatttcttattctttgttccaaaatcaagtaaaaccaccagcttcatcggtaacaccaccagctcacaatccaaatcaga |
54866276 |
T |
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| Q |
118 |
tcataaagcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgctcccacaaccgtcacttctctttacaacatcactcccgtttt |
211 |
Q |
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| T |
54866275 |
tcataaggtgcacaatcatcaaagaatgcatcacaccactcaaatgcgtcgctcccacaaccgtcactcctctttacaa-atcactcccgtttt |
54866183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 209 - 240
Target Start/End: Complemental strand, 54865775 - 54865744
Alignment:
| Q |
209 |
tttaattgaaccaggagggttagaaaccacac |
240 |
Q |
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| T |
54865775 |
tttaattgaaccaggagggttagaaaccacac |
54865744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: scaffold0472
Description:
Target: scaffold0472; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 211
Target Start/End: Complemental strand, 260 - 138
Alignment:
| Q |
80 |
ttcatcagtaacaccaccagctcacaatccaaatcagatcataaagcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgctcccacaacc |
179 |
Q |
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| T |
260 |
ttcatcagtaacaccaccagctcagaatccaaatcagatcataa--gacacaatcatcaaagaatgcatcacactagtcaaat-------tcccaccacc |
170 |
T |
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| Q |
180 |
gtcacttctctttacaacatcactcccgtttt |
211 |
Q |
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|||||| ||||||||||||||||||||||||| |
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| T |
169 |
gtcactcctctttacaacatcactcccgtttt |
138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0472; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 475 - 426
Alignment:
| Q |
18 |
acctctctctttcaacttccaatttcttattctttgttccaaaatcaagt |
67 |
Q |
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| T |
475 |
acctctctctttcaaattctaatttcttatttttcattccaaaatcaagt |
426 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 102 - 170
Target Start/End: Original strand, 5970748 - 5970814
Alignment:
| Q |
102 |
cacaatccaaatcagatcataaagcgcacaatcatcaaagaatgcatcacaccagtcaaatgcgtcgct |
170 |
Q |
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| T |
5970748 |
cacaatccaaatcagatcataaggc--acaagcatcaaagaatgcatcacaccagtcaaatgcatcgct |
5970814 |
T |
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